Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10471
         (441 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1) ...   131   2e-31
At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4) ...   120   3e-28
At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3, mitoch...   120   4e-28
At5g63310.1 68418.m07945 nucleotide diphosphate kinase II, chlor...   118   2e-27
At1g17410.1 68414.m02126 nucleoside diphosphate kinase family pr...    63   7e-11
At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)...    30   0.80 
At1g36050.1 68414.m04479 expressed protein                             28   3.2  
At3g47450.2 68416.m05160 expressed protein                             27   5.6  
At3g47450.1 68416.m05159 expressed protein                             27   5.6  
At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase cyc...    27   7.4  
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s...    26   9.8  

>At4g09320.1 68417.m01542 nucleoside diphosphate kinase 1 (NDK1)
           identical to identical to Nucleoside diphosphate kinase
           I (NDK I) (NDP kinase I) (NDPK I) (SP:P39207)
           [Arabidopsis thaliana]; contains Pfam PF00334 :
           Nucleoside diphosphate kinase domain;
          Length = 169

 Score =  131 bits (316), Expect = 2e-31
 Identities = 58/83 (69%), Positives = 71/83 (85%)
 Frame = +1

Query: 10  QQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQPGTIRGDL 189
           ++HY DL+S+ FF GLV Y+ SGPVV M+WEG NVV TGRK++GATNPA S+PGTIRGD 
Sbjct: 66  EKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDF 125

Query: 190 *IQVGRNIIHGSDSVESAKKEMA 258
            I +GRN+IHGSDSVESA+KE+A
Sbjct: 126 AIDIGRNVIHGSDSVESARKEIA 148


>At4g23900.1 68417.m03438 nucleoside diphosphate kinase 4 (NDK4)
           contains Pfam PF00334 : Nucleoside diphosphate kinase
           domain; identical to nucleoside diphosphate kinase 4
           (GI:11990430)  [Arabidopsis thaliana]
          Length = 237

 Score =  120 bits (290), Expect = 3e-28
 Identities = 54/91 (59%), Positives = 70/91 (76%)
 Frame = +1

Query: 10  QQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQPGTIRGDL 189
           Q+HY DL  RPFF GL  ++SSGPVV MVWEG  V++ GRK++GAT+P  S+PGTIRGDL
Sbjct: 132 QKHYHDLKERPFFNGLCNFLSSGPVVAMVWEGEGVIRYGRKLIGATDPQKSEPGTIRGDL 191

Query: 190 *IQVGRNIIHGSDSVESAKKEMASGLRTKKL 282
            + VGRNIIHGSD  E+AK E++   + ++L
Sbjct: 192 AVVVGRNIIHGSDGPETAKDEISLWFKPEEL 222


>At4g11010.1 68417.m01790 nucleoside diphosphate kinase 3,
           mitochondrial (NDK3) identical to Nucleoside diphosphate
           kinase III, mitochondrial precursor  (NDK III) (NDP
           kinase III) (NDPK III) (SP:O49203) [Arabidopsis
           thaliana]; contains Pfam PF00334 : Nucleoside
           diphosphate kinase domain;
          Length = 238

 Score =  120 bits (289), Expect = 4e-28
 Identities = 53/94 (56%), Positives = 71/94 (75%)
 Frame = +1

Query: 1   ELLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQPGTIR 180
           +  Q+HY DL  RPFF GL  ++SSGPV+ MVWEG  V++ GRK++GAT+P  S+PGTIR
Sbjct: 130 DFAQKHYHDLKERPFFNGLCDFLSSGPVIAMVWEGDGVIRYGRKLIGATDPQKSEPGTIR 189

Query: 181 GDL*IQVGRNIIHGSDSVESAKKEMASGLRTKKL 282
           GDL + VGRNIIHGSD  E+AK E++   + ++L
Sbjct: 190 GDLAVTVGRNIIHGSDGPETAKDEISLWFKPQEL 223


>At5g63310.1 68418.m07945 nucleotide diphosphate kinase II,
           chloroplast (NDPK2) identical to SP|O64903 Nucleoside
           diphosphate kinase II, chloroplast precursor (NDK II)
           (NDP kinase II) (NDPK II) (NDPK Ia) [Arabidopsis
           thaliana]; contains Pfam PF00334 : Nucleoside
           diphosphate kinase domain; contains Pfam profile
           PF00334: Nucleoside diphosphate kinase
          Length = 231

 Score =  118 bits (284), Expect = 2e-27
 Identities = 48/85 (56%), Positives = 69/85 (81%)
 Frame = +1

Query: 1   ELLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPADSQPGTIR 180
           EL ++HY DL+++ FFP L++Y++SGPVV M WEG+ VV + RK++G T+P  ++PGTIR
Sbjct: 125 ELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIR 184

Query: 181 GDL*IQVGRNIIHGSDSVESAKKEM 255
           GDL +Q GRNI+HGSDS E+ K+E+
Sbjct: 185 GDLAVQTGRNIVHGSDSPENGKREI 209


>At1g17410.1 68414.m02126 nucleoside diphosphate kinase family
           protein contains Pfam PF00334 : Nucleoside diphosphate
           kinase domain; similar to Nucleoside diphosphate kinase
           homolog 5 (NDK-H 5) (NDP kinase homolog 5) (nm23-H5)
           (Testis-specific nm23 homolog) (Inhibitor of p53-induced
           apoptosis-beta) (IPIA-beta) (SP:P56597) {Homo sapiens}
          Length = 181

 Score = 63.3 bits (147), Expect = 7e-11
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
 Frame = +1

Query: 1   ELLQQHYSDLASRPFFPGLVKYMSSGPVVPMVWEGLNVVKTGRKMLGATNPAD---SQPG 171
           E     Y + +SR FFP LV YM+SGPV+ MV E  N V   R ++G T+      S P 
Sbjct: 74  ETASAFYEEHSSRSFFPHLVTYMTSGPVLVMVLEKRNAVSDWRDLIGPTDAEKAKISHPH 133

Query: 172 TIRGDL*IQVGRNIIHGSDSVESAKKEM 255
           +IR        +N +HGSDS  SA++E+
Sbjct: 134 SIRALCGKNSQKNCVHGSDSTSSAEREI 161


>At5g67430.1 68418.m08502 GCN5-related N-acetyltransferase (GNAT)
           family protein contains Pfam profile PF00583:
           acetyltransferase, GNAT family
          Length = 386

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
 Frame = -1

Query: 312 PSFHLQVSS-PQLLCP*TRGHF-LFSR-FNAVRTMDDVTPNLNSEITAYSARLRVS 154
           PSFH+ V+     +    RG   + +R  NA+R  DDV+P +N+   A+ + LRVS
Sbjct: 50  PSFHMLVAEIGNEIVGMIRGTIKMVTRGVNALRQADDVSPEINTTKLAFVSGLRVS 105


>At1g36050.1 68414.m04479 expressed protein
          Length = 386

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -1

Query: 414 GVHVYENVSFNHRMFNINHE-NKTIYTD 334
           GVHV++ ++F    FNI+H+ N+  Y D
Sbjct: 230 GVHVHDLLAFQKDSFNISHKINRLTYGD 257


>At3g47450.2 68416.m05160 expressed protein
          Length = 561

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 218 WMMLRPT*IQRS--PRIVPGCESAGLVAPSILRPVFTTLRPSHTIGTTGPE 72
           W+ + P    R   PR +   E    +  S+ +PV   LRP+  IGT+G E
Sbjct: 491 WISIEPIRKTRGTEPRDLNEAEHEIHICVSVPKPVEVFLRPTLPIGTSGTE 541


>At3g47450.1 68416.m05159 expressed protein
          Length = 561

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -2

Query: 218 WMMLRPT*IQRS--PRIVPGCESAGLVAPSILRPVFTTLRPSHTIGTTGPE 72
           W+ + P    R   PR +   E    +  S+ +PV   LRP+  IGT+G E
Sbjct: 491 WISIEPIRKTRGTEPRDLNEAEHEIHICVSVPKPVEVFLRPTLPIGTSGTE 541


>At5g13120.1 68418.m01503 peptidyl-prolyl cis-trans isomerase
           cyclophilin-type family protein contains Pfam domain,
           PF00160: peptidyl-prolyl cis-trans isomerase,
           cyclophilin-type
          Length = 259

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -1

Query: 384 NHRMFNINHENKTIYTD*NEFTHKPSFHLQVSSP 283
           NHR F++    + +    ++ THK  F + V +P
Sbjct: 68  NHRCFSVQSNAEVVTEPQSKITHKVYFDISVGNP 101


>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
           similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
           [Drosophila melanogaster]
          Length = 926

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)
 Frame = -2

Query: 326 NLLINPVFICRYPAHNFFVRKPEAISFLADSTLSEPWMMLRPT*IQRSPRIVPGCESAGL 147
           N+    V +CR   HN F+R+    S L D  + E    LR    Q     V   +   L
Sbjct: 130 NIAFEVVDVCRAVKHNLFIRRAH-FSALIDRDIHEAVQNLRDP-NQLFAEAVDARQEIDL 187

Query: 146 -VAPSILRPVFTTLRPSHTIGTTGPE 72
            +  S  R     LR    I +TG E
Sbjct: 188 RIGASFTRFQTMLLRDRFAIDSTGEE 213


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,901,897
Number of Sequences: 28952
Number of extensions: 194324
Number of successful extensions: 447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 702840360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)