Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10470
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    33   0.045
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch...    31   0.14 
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    29   0.42 
SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyce...    26   3.9  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    25   6.8  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.0  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   9.0  

>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +1

Query: 514 RGQVYLKLNKPNACIKDCTHALELNCDSAGPY 609
           R   YLK+  P  CI+DC  A+EL+ + A  Y
Sbjct: 439 RAAAYLKVMAPAECIRDCNKAIELDPNFAKAY 470


>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +2

Query: 428 FSEQKYDEAINLYTAAIQLNPQSALLFLNGDR 523
           + E+KY EAI  YT AI L   SAL     +R
Sbjct: 34  YKEKKYAEAIKAYTEAIDLGSDSALAIYYSNR 65


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 502 VVSKRGQVYLKLNKPNACIKDCTHALELN 588
           V+ +RG  YL+L  P+   +D  H+LEL+
Sbjct: 77  VIWRRGLAYLRLGHPHLANRDWEHSLELD 105


>SPCC330.02 |rhp7|SPCC613.14|Rad7 homolog Rhp7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 563

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 207 DFTAAGDKKSSNEEKVNRHLTRNRSLN 287
           D  A GD    N +K+++ +++NRSLN
Sbjct: 205 DIEAFGDIGQVNMDKISQIISKNRSLN 231


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +3

Query: 81  LKSFVEICKTQPQLLHHPQLAFF--KDYLISLGVSLPTATFGAK 206
           L+S++    T P LL+ P+L  F   DY  S  ++    T G K
Sbjct: 183 LQSWLNYVSTNPNLLYDPELQLFVESDYGYSPLINTGNPTSGLK 226


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 443 YDEAINLYTAAIQLNPQSALLFLNGDRC 526
           YD     +TA+ + +P S  LFLNG RC
Sbjct: 635 YDNTRYRFTAS-RSSPGSYHLFLNGSRC 661


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -2

Query: 130 WCNSCGCVLHISTKDFNWSN 71
           WC  C C+ H    D+  SN
Sbjct: 366 WCTYCLCLAHYKLGDYEESN 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,356,688
Number of Sequences: 5004
Number of extensions: 42929
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)