Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10470
         (626 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)                 48   8e-06
SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.58 
SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)                 30   1.8  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.3  
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)                  28   7.1  

>SB_55147| Best HMM Match : TPR_2 (HMM E-Value=1.8e-10)
          Length = 559

 Score = 47.6 bits (108), Expect = 8e-06
 Identities = 19/39 (48%), Positives = 28/39 (71%)
 Frame = +1

Query: 508 SKRGQVYLKLNKPNACIKDCTHALELNCDSAGPYKFRGR 624
           +KR   ++++ KPNA I+DC  A ++N DSA  YK+RGR
Sbjct: 86  AKRASCFIRMKKPNAAIRDCDKAAQINPDSAQIYKWRGR 124



 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +2

Query: 446 DEAINLYTAAIQLNPQSALLFLNGDRC 526
           +EAI L+T AI  NP SA LF     C
Sbjct: 65  EEAIKLFTDAIMKNPHSAPLFAKRASC 91


>SB_42562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 425 AFSEQKYDEAINLYTAAIQLNPQSALLFLN 514
           AF +QKY+EA+ LYT A+  +  +   + N
Sbjct: 130 AFKQQKYEEAVKLYTQALNQDRTNTAFYTN 159


>SB_19825| Best HMM Match : TPR_2 (HMM E-Value=4.8e-30)
          Length = 592

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 481 IKSTECFVVSKRGQVYLKLNKPNACIKDCTHALELNCD 594
           +K T+ F +  R + YLKL K +A  +D   ALE + D
Sbjct: 45  LKPTDPFCLVARSKCYLKLGKNDAAYRDAEAALEEDKD 82


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 481 IKSTECFVVSKRGQVYLKLNKPNACIKDCTHALEL 585
           +  T+  + S R   +LKLNKP   + DC   L+L
Sbjct: 893 LTKTDHRLFSNRALCHLKLNKPKEALADCESCLKL 927


>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 484 KSTECFVVSKRGQVYLKLNKPNACIKDCTHALELN 588
           KST   +   R  V  KL K +  I+DCT A+ L+
Sbjct: 67  KSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMNLD 101


>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
          Length = 264

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 484 KSTECFVVSKRGQVYLKLNKPNACIKDCTHALELN 588
           KST   +   R  V  KL K +  I+DCT A+ L+
Sbjct: 67  KSTNAKLYYNRAVVGSKLGKNDQAIEDCTQAMNLD 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,507,148
Number of Sequences: 59808
Number of extensions: 311833
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)