Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10470
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   9.8  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   9.8  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -2

Query: 109 VLHISTKDFNWSNCSALYGQLIFLC 35
           ++ +  K + W + S L G   FLC
Sbjct: 380 LVSLDKKQYTWRHTSVLIGWSAFLC 404


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/25 (32%), Positives = 11/25 (44%)
 Frame = -2

Query: 121 SCGCVLHISTKDFNWSNCSALYGQL 47
           S G +LHI   +     C   YG +
Sbjct: 109 SAGSLLHICMLELGHEVCGRFYGNI 133


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 126 HHPQLAFFKDYLISLGVSLPTATFGAKDFTAAGDKKSSNE 245
           ++PQ+ F  DY I   V L       K      D KS N+
Sbjct: 121 YNPQVDFVADYKIEGKVLLLPVRGAGKSNITMYDLKSHND 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,588
Number of Sequences: 438
Number of extensions: 3028
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)