Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10470
(626 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containi... 52 3e-07
At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to te... 51 7e-07
At1g68185.1 68414.m07789 ubiquitin-related similar to ubiquitin-... 36 0.029
At2g42810.1 68415.m05300 serine/threonine protein phosphatase, p... 35 0.051
At1g12270.1 68414.m01419 stress-inducible protein, putative simi... 35 0.051
At1g62740.1 68414.m07081 stress-inducible protein, putative simi... 33 0.16
At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containi... 33 0.21
At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containi... 33 0.21
At4g12400.1 68417.m01960 stress-inducible protein, putative simi... 33 0.21
At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containi... 31 0.63
At4g11260.1 68417.m01822 phosphatase-related low similarity to p... 31 0.83
At4g23570.2 68417.m03396 phosphatase-related low similarity to p... 30 1.4
At4g23570.1 68417.m03395 phosphatase-related low similarity to p... 30 1.4
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s... 29 2.5
At1g66550.1 68414.m07561 WRKY family transcription factor simila... 28 5.8
>At4g22670.1 68417.m03272 tetratricopeptide repeat (TPR)-containing
protein similar to Hsc70-interacting protein (Hip) from
{Homo sapiens} SP|P50502, {Rattus norvegicus} SP|P50503;
contains Pfam profile PF00515: tetratricopeptide repeat
(TPR) domain
Length = 441
Score = 52.0 bits (119), Expect = 3e-07
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +1
Query: 478 TIKSTECFVVSKRGQVYLKLNKPNACIKDCTHALELNCDSAGPYKFRG 621
T+ T + R VY+KL KPNA I+D ALE+N DSA YK RG
Sbjct: 151 TLNPTSAIMYGNRASVYIKLKKPNAAIRDANAALEINPDSAKGYKSRG 198
Score = 51.2 bits (117), Expect = 5e-07
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +3
Query: 60 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPT 188
++ +L +LK F++ CK+ P LL P L+FF+DYL SLG +PT
Sbjct: 2 DSTKLSELKVFIDQCKSDPSLLTTPSLSFFRDYLESLGAKIPT 44
Score = 43.2 bits (97), Expect = 1e-04
Identities = 25/70 (35%), Positives = 31/70 (44%)
Frame = +2
Query: 305 MEGVIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAAIQL 484
+EG D Q MGD + AM A SE +DEAI T AI L
Sbjct: 93 LEGDTVEPDNDPPQKMGDSSVEVTDENREAAQEAKGKAMEALSEGNFDEAIEHLTRAITL 152
Query: 485 NPQSALLFLN 514
NP SA+++ N
Sbjct: 153 NPTSAIMYGN 162
>At3g17880.1 68416.m02278 tetratricoredoxin (TDX) identical to
tetratricoredoxin [Arabidopsis thaliana] GI:18041544;
similar to SP|Q42443 Thioredoxin H-type (TRX-H) (Phloem
sap 13 kDa protein-1) {Oryza sativa}; contains Pfam
profile: PF00085 Thioredoxin
Length = 380
Score = 50.8 bits (116), Expect = 7e-07
Identities = 25/64 (39%), Positives = 35/64 (54%)
Frame = +3
Query: 60 NAEQLDQLKSFVEICKTQPQLLHHPQLAFFKDYLISLGVSLPTATFGAKDFTAAGDKKSS 239
+A Q+ +L+ FVE K P +LH P L FFK+YL SLG +P +D+ + K S
Sbjct: 3 DAIQVAELRRFVEQLKLNPSILHDPSLVFFKEYLRSLGAQVPKIEKTERDYEDKAETKPS 62
Query: 240 NEEK 251
K
Sbjct: 63 FSPK 66
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Frame = +1
Query: 481 IKSTECFVVSKRGQVYLKLNKPNACIKDCTHALELNCDSAGPYKFRG 621
+ T + + R V+LK+ KPNA I+D AL+ N DSA YK RG
Sbjct: 141 LNPTSAILYATRASVFLKVKKPNAAIRDANVALQFNSDSAKGYKSRG 187
Score = 44.4 bits (100), Expect = 6e-05
Identities = 24/65 (36%), Positives = 32/65 (49%)
Frame = +2
Query: 314 VIAPDQTDESQDMGDPNXXXXXXXXXXXXXXXXXAMRAFSEQKYDEAINLYTAAIQLNPQ 493
V+ PD + Q MGDP AM A S+ ++DEAI T A+ LNP
Sbjct: 86 VVEPDN-EPPQPMGDPTAEVTDENRDDAQSEKSKAMEAISDGRFDEAIEHLTKAVMLNPT 144
Query: 494 SALLF 508
SA+L+
Sbjct: 145 SAILY 149
>At1g68185.1 68414.m07789 ubiquitin-related similar to
ubiquitin-like protein smt3/pmt3 SP:O13351 from [Fission
yeast]
Length = 215
Score = 35.5 bits (78), Expect = 0.029
Identities = 12/35 (34%), Positives = 24/35 (68%)
Frame = +2
Query: 419 MRAFSEQKYDEAINLYTAAIQLNPQSALLFLNGDR 523
+R F+++K++ I LYT +L+PQ+ + +GD+
Sbjct: 156 LRVFADEKFERVIKLYTDKAKLDPQNLVFIFDGDK 190
>At2g42810.1 68415.m05300 serine/threonine protein phosphatase,
putative similar to SP|P53042 Serine/threonine protein
phosphatase 5 (EC 3.1.3.16) (PP5) (Protein phosphatase
T) (PPT) {Rattus norvegicus}; contains Pfam profiles
PF00149: Ser/Thr protein phosphatase, PF00515: TPR
Domain
Length = 484
Score = 34.7 bits (76), Expect = 0.051
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +2
Query: 416 AMRAFSEQKYDEAINLYTAAIQLNPQSALLFLN 514
A AF KY AI+LYT AI+LN +A+ + N
Sbjct: 20 ANEAFKGHKYSSAIDLYTKAIELNSNNAVYWAN 52
>At1g12270.1 68414.m01419 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 572
Score = 34.7 bits (76), Expect = 0.051
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 505 VSKRGQVYLKLNKPNACIKDCTHALELNCDSAGPYKFRGR 624
++ R VYL++ K N CI+DC A+E + YK R
Sbjct: 281 LTNRAAVYLEMGKYNECIEDCNKAVERGRELRSDYKMVAR 320
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +2
Query: 428 FSEQKYDEAINLYTAAIQLNPQSALLFLN 514
F EQKY EAI YT AI+ NP + N
Sbjct: 394 FKEQKYPEAIKHYTEAIKRNPNDHKAYSN 422
Score = 27.9 bits (59), Expect = 5.8
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 425 AFSEQKYDEAINLYTAAIQLNPQSALLFLN 514
AFS + AIN +T AI L P + +LF N
Sbjct: 12 AFSSGDFTTAINHFTEAIALAPTNHVLFSN 41
>At1g62740.1 68414.m07081 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 571
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 428 FSEQKYDEAINLYTAAIQLNPQSALLFLNGDRC 526
F EQKY +A+ YT AI+ NP+ + N C
Sbjct: 393 FKEQKYPDAVRHYTEAIKRNPKDPRAYSNRAAC 425
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 505 VSKRGQVYLKLNKPNACIKDCTHALELNCDSAGPYK 612
++ R V+L++ K + CIKDC A+E + YK
Sbjct: 280 ITNRAAVHLEMGKYDECIKDCDKAVERGRELRSDYK 315
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 425 AFSEQKYDEAINLYTAAIQLNPQSALLFLN 514
AFS ++ A+N +T AI L P + +LF N
Sbjct: 12 AFSSGDFNSAVNHFTDAINLTPTNHVLFSN 41
>At4g30480.2 68417.m04328 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 277
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 514 RGQVYLKLNKPNACIKDCTHALELN 588
RG +LKL K IK+CT ALELN
Sbjct: 152 RGVCFLKLGKCEETIKECTKALELN 176
>At4g30480.1 68417.m04327 tetratricopeptide repeat (TPR)-containing
protein similar to SP|Q99614 Tetratricopeptide repeat
protein 1 {Homo sapiens}; contains Pfam profile PF00515:
TPR Domain
Length = 208
Score = 32.7 bits (71), Expect = 0.21
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +1
Query: 514 RGQVYLKLNKPNACIKDCTHALELN 588
RG +LKL K IK+CT ALELN
Sbjct: 152 RGVCFLKLGKCEETIKECTKALELN 176
>At4g12400.1 68417.m01960 stress-inducible protein, putative similar
to sti (stress inducible protein) [Glycine max]
GI:872116; contains Pfam profile PF00515 TPR Domain
Length = 530
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 428 FSEQKYDEAINLYTAAIQLNPQSALLFLNGDRC 526
F EQKY EA+ Y+ AI+ NP + N C
Sbjct: 380 FKEQKYPEAVKHYSEAIKRNPNDVRAYSNRAAC 412
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 505 VSKRGQVYLKLNKPNACIKDCTHALELNCDSAGPYKFRGR 624
++ R VYL++ K CI+DC A+E + +K R
Sbjct: 267 LTNRAAVYLEMGKYEECIEDCDKAVERGRELRSDFKMIAR 306
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 425 AFSEQKYDEAINLYTAAIQLNPQSALLFLN 514
AFS Y AI +T AI L+P + +L+ N
Sbjct: 12 AFSSGDYATAITHFTEAINLSPTNHILYSN 41
>At5g43120.1 68418.m05264 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515: TPR Domain
Length = 588
Score = 31.1 bits (67), Expect = 0.63
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 469 CSHTIKSTECFVVSKRGQVYLKLNKPNACIKDCTHALELN 588
C ++ + S+RG+ YL L +A I DCT AL L+
Sbjct: 454 CPLKLRRKRMNLYSERGECYLLLGDVDAAISDCTRALCLS 493
>At4g11260.1 68417.m01822 phosphatase-related low similarity to
protein phosphatase T [Saccharomyces cerevisiae]
GI:897806; contains Pfam profiles PF00515: TPR Domain,
PF05002: SGS domain, PF04969: CS domain
Length = 358
Score = 30.7 bits (66), Expect = 0.83
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 416 AMRAFSEQKYDEAINLYTAAIQLNPQSALLF 508
A AF + +D A++LY+ AI L+P A F
Sbjct: 9 AKEAFLDDDFDVAVDLYSKAIDLDPNCAAFF 39
>At4g23570.2 68417.m03396 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 416 AMRAFSEQKYDEAINLYTAAIQLNPQSALLF 508
A AF + +D A++LY+ AI L+P A F
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFF 39
>At4g23570.1 68417.m03395 phosphatase-related low similarity to
phosphoprotein phosphatase [Mus musculus] GI:567040;
contains Pfam profiles PF00515: TPR Domain, PF05002: SGS
domain, PF04969: CS domain
Length = 350
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 416 AMRAFSEQKYDEAINLYTAAIQLNPQSALLF 508
A AF + +D A++LY+ AI L+P A F
Sbjct: 9 AKEAFVDDDFDVAVDLYSKAIDLDPNCAEFF 39
>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
subunit, putative similar to component of chloroplast
outer membrane translocon Toc64 [Pisum sativum]
GI:7453538; contains Pfam profiles PF01425: Amidase,
PF00515: TPR Domain
Length = 603
Score = 29.1 bits (62), Expect = 2.5
Identities = 11/30 (36%), Positives = 21/30 (70%)
Frame = +2
Query: 425 AFSEQKYDEAINLYTAAIQLNPQSALLFLN 514
A+ +++++A+N YT AI+LN +A + N
Sbjct: 498 AYKGKQWNKAVNFYTEAIKLNGANATYYCN 527
>At1g66550.1 68414.m07561 WRKY family transcription factor similar
to DNA-binding protein 3 [Nicotiana tabacum] GI:7406995
Length = 254
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 472 SHTIKSTECFVVSKRGQVYLKLNKPNACIKDCTHALELNCDS 597
S T+ + F K GQ +K + C CT+A + NC++
Sbjct: 102 SRTMCPNDGFTWRKYGQKTIKASAHKRCYYRCTYAKDQNCNA 143
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,165,267
Number of Sequences: 28952
Number of extensions: 219341
Number of successful extensions: 518
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -