Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10467
(718 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 106 3e-24
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 59 5e-10
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 47 3e-06
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 38 0.002
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 37 0.003
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 31 0.22
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 30 0.38
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.88
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 1.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.0
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 26 4.7
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.7
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 25 8.2
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 8.2
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 106 bits (255), Expect = 3e-24
Identities = 52/84 (61%), Positives = 64/84 (76%), Gaps = 1/84 (1%)
Frame = +3
Query: 255 ISAAVSKTAVAPNERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 431
+SAAVSKTA AP ERVKLL+Q Q + + RYKGI + F R E+G++S WRGN
Sbjct: 36 VSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNT 95
Query: 432 ANVIRYFPTQALNFAFKDKYKQVF 503
ANV+RYFPTQALNFAFKDK+K++F
Sbjct: 96 ANVLRYFPTQALNFAFKDKFKKMF 119
Score = 39.9 bits (89), Expect = 4e-04
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Frame = +2
Query: 584 SLCFVYPLDFARTRLAADV--GKGDGQREFSGLGKLHQQ 694
SL FVY LD+ARTRLA D K G+R+F+GL ++++
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRK 184
Score = 29.1 bits (62), Expect = 0.66
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 330 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 506
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVL 224
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 59.3 bits (137), Expect = 5e-10
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +3
Query: 255 ISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 434
++A VS+TAV+P ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN
Sbjct: 29 VAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGT 81
Query: 435 NVIRYFPTQALNFAFKDKYKQ 497
N +R FP A+ FA + KQ
Sbjct: 82 NCLRAFPYGAVQFATFNMLKQ 102
Score = 31.5 bits (68), Expect = 0.12
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 267 VSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 446
+ +T P + ++ QV + YK I A I K +G+ F+RG +N+++
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295
Query: 447 YFPTQALNF 473
P ++ +
Sbjct: 296 IIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 46.8 bits (106), Expect = 3e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Frame = +3
Query: 228 VR*GLPGWRISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 407
V+ G+ G + V+K+ VAP +RVK+L Q H S + A R+ G+ A I GL
Sbjct: 18 VKSGIAGGT-AGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGL 75
Query: 408 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFL 506
++G+ A + R FP + F ++ ++V +
Sbjct: 76 HGLYQGHTATLYRVFPYAGIKFVAYEQVRRVLI 108
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/81 (24%), Positives = 38/81 (46%)
Frame = +3
Query: 255 ISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 434
+S + T V P ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 344 LSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSP 400
Query: 435 NVIRYFPTQALNFAFKDKYKQ 497
N+++ P+ A+++ + K+
Sbjct: 401 NLLKVAPSVAISYLVYENCKK 421
Score = 29.5 bits (63), Expect = 0.50
Identities = 19/91 (20%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 ISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNF 431
++ +V++ + P + +K +Q +S+ Q K I+ + + + K G+ ++RG
Sbjct: 237 MAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVL 292
Query: 432 ANVIRYFPTQALNFAFKDKYKQVFLGALTRR 524
++ FP A + + K+ ++G L R
Sbjct: 293 VGILGMFPYSATDLGTFEGLKRTWIGILASR 323
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 357 YKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGALTRRRSSG 536
Y G D +I K +G +RG ++ P +AL FA D Y +++ R+ SS
Sbjct: 45 YNGTFDCLKKIVKNEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLWRKVFKRKDSSP 104
Query: 537 VTSLV 551
S++
Sbjct: 105 ALSIL 109
Score = 31.5 bits (68), Expect = 0.12
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +3
Query: 282 VAPNERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 458
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 459 QALNFAFKDKYKQVFLGALTR 521
A F K + A +R
Sbjct: 175 NAGYFGVIQKIRNSLTPASSR 195
Score = 29.5 bits (63), Expect = 0.50
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 596 VYPLDFARTRLAADVGKGDGQREFSGLGKL 685
+YPLD +TR+ VGK D F L K+
Sbjct: 26 LYPLDVVKTRMQLSVGKSDYNGTFDCLKKI 55
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 30.7 bits (66), Expect = 0.22
Identities = 20/78 (25%), Positives = 37/78 (47%)
Frame = +3
Query: 240 LPGWRISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 419
L G I+ ++ P+E V+ L+ S I +Y G++ F + EQG++ +
Sbjct: 276 LGGAGIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLY 332
Query: 420 RGNFANVIRYFPTQALNF 473
G A+++R P + F
Sbjct: 333 GGLTAHLLRVVPNACILF 350
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 29.9 bits (64), Expect = 0.38
Identities = 13/56 (23%), Positives = 26/56 (46%)
Frame = +3
Query: 333 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 500
+ ++A + YK + +I + GLL FW G + R + + F +K ++
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 28.7 bits (61), Expect = 0.88
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 342 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 440
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 1.2
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 473 RLQGQVQAGVPRGVDKKTQFWRYFXXXXXXXXXXXXTSLCF--VYPLDFART 622
RLQ Q A +P V + +FWR F TS+ F P DFA T
Sbjct: 7 RLQPQRFAALPNPVTAENKFWRSFKVPVVAKEYSAITSIHFSAESPYDFAVT 58
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -3
Query: 662 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRS 540
H P R R RD RS +RS R HR DY RS
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 26.2 bits (55), Expect = 4.7
Identities = 18/82 (21%), Positives = 35/82 (42%)
Frame = +3
Query: 255 ISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 434
IS+ + + +AP + +K+ +Q+ S + F +++G+ + WRGN
Sbjct: 25 ISSVICRFMIAPFDVIKIRMQITQSSLR-----------PVFKETVQKEGVRALWRGNVV 73
Query: 435 NVIRYFPTQALNFAFKDKYKQV 500
+ Y A F K K +
Sbjct: 74 AELLYLVYGAAEFVAFSKLKHL 95
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 78 YEITPNLLFKNQELVFRDPPSACAATPTSTY 170
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 290 KRACQAAAPSTARQQADRRRPALQGYRRRLRPHPQ 394
KR+ +A + +++++ RR+P + + + P PQ
Sbjct: 502 KRSVEANSSNSSKKTRKRRKPTPKSFNPKATPDPQ 536
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 366 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 458
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,142
Number of Sequences: 5004
Number of extensions: 52476
Number of successful extensions: 173
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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