Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10467
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   156   2e-40
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   156   2e-40
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.8  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (379), Expect = 2e-40
 Identities = 70/89 (78%), Positives = 81/89 (91%)
 Frame = +3

Query: 255 ISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 434
           ++AA+SKT VAP ERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN A
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 435 NVIRYFPTQALNFAFKDKYKQVFLGALTR 521
           NVIRYFPTQALNFAFKDKYKQVFLG + +
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 82.6 bits (195), Expect = 3e-18
 Identities = 39/57 (68%), Positives = 41/57 (71%)
 Frame = +2

Query: 509 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLG 679
           GVDK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLG
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLG 160



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 202 MSNLADPVAFAKDFLAGG 255
           MS LADPVAFAKDFLAGG
Sbjct: 1   MSGLADPVAFAKDFLAGG 18



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 240 LPGWRISAAVSKTAVA---PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 410
           L  W I+  V+  A     P + V+  + +Q  S +  ++  YK  +  +  I K +G  
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 411 SFWRGNFANVIR 446
           +F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 348 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 485
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  156 bits (379), Expect = 2e-40
 Identities = 70/89 (78%), Positives = 81/89 (91%)
 Frame = +3

Query: 255 ISAAVSKTAVAPNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFA 434
           ++AA+SKT VAP ERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN A
Sbjct: 19  VAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLA 78

Query: 435 NVIRYFPTQALNFAFKDKYKQVFLGALTR 521
           NVIRYFPTQALNFAFKDKYKQVFLG + +
Sbjct: 79  NVIRYFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 82.6 bits (195), Expect = 3e-18
 Identities = 39/57 (68%), Positives = 41/57 (71%)
 Frame = +2

Query: 509 GVDKKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGLG 679
           GVDK TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GLG
Sbjct: 104 GVDKNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGLG 160



 Score = 38.3 bits (85), Expect = 7e-05
 Identities = 17/18 (94%), Positives = 17/18 (94%)
 Frame = +1

Query: 202 MSNLADPVAFAKDFLAGG 255
           MS LADPVAFAKDFLAGG
Sbjct: 1   MSGLADPVAFAKDFLAGG 18



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 240 LPGWRISAAVSKTAVA---PNERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 410
           L  W I+  V+  A     P + V+  + +Q  S +  ++  YK  +  +  I K +G  
Sbjct: 213 LISWGIAQVVTTVAGIVSYPFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGN 270

Query: 411 SFWRGNFANVIR 446
           +F++G F+N++R
Sbjct: 271 AFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +3

Query: 348 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 485
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 434 QRHQVLPDPGAQLRLQGQVQAGVPRGVDK 520
           +R Q   DP   + LQ Q Q+  P G+ K
Sbjct: 773 KRVQTPFDPDVPIELQIQKQSHTPNGIVK 801


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +3

Query: 465 LNFAFKDKYKQVFLGALTRRR 527
           +N+ + DKYK   LGA+   +
Sbjct: 131 INWEYLDKYKPTPLGAVATEK 151


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,082
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)