Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10466
(587 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q7PVQ9 Cluster: DNA-directed RNA polymerase II subunit ... 154 2e-36
UniRef50_Q59FR2 Cluster: MGC13098 protein variant; n=8; Deuteros... 124 1e-27
UniRef50_Q38859 Cluster: DNA-directed RNA polymerase II subunit ... 86 7e-16
UniRef50_P87123 Cluster: DNA-directed RNA polymerase II subunit ... 84 2e-15
UniRef50_Q54ZA7 Cluster: RNA polymerase II core subunit; n=2; Di... 82 1e-14
UniRef50_A3FPR0 Cluster: RNA polymerase II, putative; n=1; Crypt... 82 1e-14
UniRef50_A4S056 Cluster: Predicted protein; n=2; Ostreococcus|Re... 81 2e-14
UniRef50_Q5KMB4 Cluster: DNA-directed RNA polymerase ii 13.3 kDa... 80 3e-14
UniRef50_P38902 Cluster: DNA-directed RNA polymerase II subunit ... 80 3e-14
UniRef50_Q4PC39 Cluster: Putative uncharacterized protein; n=1; ... 78 2e-13
UniRef50_Q54ES6 Cluster: Putative RNA polymerase III subunit; n=... 75 2e-12
UniRef50_UPI00004997FF Cluster: RNA polymerases II subunit; n=1;... 73 7e-12
UniRef50_UPI0000E4658A Cluster: PREDICTED: similar to LOC494863 ... 72 9e-12
UniRef50_P28000 Cluster: DNA-directed RNA polymerases I and III ... 71 2e-11
UniRef50_A0BUX3 Cluster: Chromosome undetermined scaffold_13, wh... 70 5e-11
UniRef50_Q4N286 Cluster: RNA polymerase small subunit, putative;... 69 8e-11
UniRef50_Q4N0T0 Cluster: DNA-directed RNA polymerase II, putativ... 69 1e-10
UniRef50_Q7R0U9 Cluster: GLP_186_18224_18619; n=2; Giardia intes... 68 1e-10
UniRef50_A4I2U7 Cluster: DNA-directed RNA polymerase II-like pro... 68 2e-10
UniRef50_Q09177 Cluster: DNA-directed RNA polymerases I and III ... 68 2e-10
UniRef50_Q0UWS5 Cluster: Putative uncharacterized protein; n=1; ... 67 3e-10
UniRef50_A0E1A2 Cluster: Chromosome undetermined scaffold_73, wh... 66 4e-10
UniRef50_Q9Y2S0 Cluster: DNA-directed RNA polymerases I and III ... 66 6e-10
UniRef50_Q6DRI4 Cluster: DNA-directed RNA polymerases I and III ... 64 2e-09
UniRef50_Q7RYP4 Cluster: Putative uncharacterized protein NCU004... 64 2e-09
UniRef50_A4R2Q3 Cluster: Putative uncharacterized protein; n=2; ... 64 2e-09
UniRef50_Q4PFC9 Cluster: Putative uncharacterized protein; n=1; ... 64 3e-09
UniRef50_Q9C256 Cluster: Related to DNA-directed RNA polymerase ... 63 4e-09
UniRef50_A6RF11 Cluster: Predicted protein; n=1; Ajellomyces cap... 62 7e-09
UniRef50_P34476 Cluster: Probable DNA-directed RNA polymerases I... 62 9e-09
UniRef50_Q4XS21 Cluster: Probable DNA-directed RNA polymerase II... 61 2e-08
UniRef50_Q2QWI0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 60 3e-08
UniRef50_Q5KMK6 Cluster: DNA-directed RNA polymerase, putative; ... 60 3e-08
UniRef50_Q22RW2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 60 5e-08
UniRef50_Q96YA7 Cluster: DNA-directed RNA polymerase subunit L; ... 60 5e-08
UniRef50_Q7R4U8 Cluster: GLP_440_20098_20403; n=1; Giardia lambl... 58 2e-07
UniRef50_A2DKG2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 58 2e-07
UniRef50_A3DM82 Cluster: RNA polymerase, dimerisation; n=1; Stap... 58 2e-07
UniRef50_Q42483 Cluster: Arabidopsis thaliana RNA polymerase I(A... 57 3e-07
UniRef50_Q4Q860 Cluster: DNA-directed RNA polymerase-like protei... 57 4e-07
UniRef50_A7AT13 Cluster: RNA polymerase small subunit protein, p... 57 4e-07
UniRef50_A6S183 Cluster: Putative uncharacterized protein; n=2; ... 57 4e-07
UniRef50_A2DQ63 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 56 5e-07
UniRef50_A6NJ25 Cluster: Uncharacterized protein ENSP00000330898... 56 5e-07
UniRef50_A5K177 Cluster: RNA polymerase small subunit, putative;... 55 1e-06
UniRef50_Q01D46 Cluster: Trithorax-like; n=3; Ostreococcus|Rep: ... 55 1e-06
UniRef50_A0E8B2 Cluster: Chromosome undetermined scaffold_82, wh... 55 1e-06
UniRef50_A7AN34 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_UPI0000499BD5 Cluster: RNA polymerases II subunit; n=1;... 52 1e-05
UniRef50_Q9VIZ0 Cluster: Probable DNA-directed RNA polymerases I... 48 2e-04
UniRef50_Q8SS03 Cluster: DNA-DIRECTED RNA POLYMERASE II; n=1; En... 46 5e-04
UniRef50_A2BNA1 Cluster: DNA-directed RNA polymerase subunit L; ... 46 7e-04
UniRef50_Q98SA6 Cluster: Dna directed RNA polymerase II 13.6 kDa... 44 0.003
UniRef50_UPI0000D55E69 Cluster: PREDICTED: similar to CG10685-PA... 42 0.008
UniRef50_Q9V2M4 Cluster: DNA-directed RNA polymerase subunit L; ... 42 0.008
UniRef50_A5UMY3 Cluster: DNA-directed RNA polymerase, subunit L,... 42 0.011
UniRef50_O30032 Cluster: DNA-directed RNA polymerase subunit L; ... 40 0.033
UniRef50_A0RXH5 Cluster: Putative uncharacterized protein; n=1; ... 38 0.13
UniRef50_A1RX43 Cluster: Transcriptional regulator, Fis family; ... 38 0.23
UniRef50_Q9YEZ1 Cluster: DNA-directed RNA polymerase subunit L; ... 37 0.40
UniRef50_O27372 Cluster: DNA-directed RNA polymerase subunit L; ... 36 0.53
UniRef50_A3HA23 Cluster: DNA-directed RNA polymerase subunit L; ... 36 0.93
UniRef50_Q2NE51 Cluster: RpoL; n=1; Methanosphaera stadtmanae DS... 35 1.2
UniRef50_Q7RS64 Cluster: Plasmodium vivax PV1H14095_P-related; n... 35 1.6
UniRef50_A7DQB4 Cluster: Putative uncharacterized protein; n=1; ... 35 1.6
UniRef50_UPI00004487EA Cluster: FAST kinase domain-containing pr... 34 2.1
UniRef50_Q8ZW46 Cluster: DNA-directed RNA polymerase subunit L; ... 34 2.8
UniRef50_Q9PM80 Cluster: DNA-directed RNA polymerase subunit alp... 34 2.8
UniRef50_A0DAY0 Cluster: Chromosome undetermined scaffold_43, wh... 33 3.7
UniRef50_Q57832 Cluster: DNA-directed RNA polymerase subunit L; ... 33 3.7
UniRef50_Q5CP80 Cluster: Putative uncharacterized protein; n=2; ... 33 6.5
UniRef50_Q68RU8 Cluster: Putative membrane protein ycf1; n=6; as... 33 6.5
UniRef50_Q74MN9 Cluster: DNA-directed RNA polymerase subunit L; ... 33 6.5
UniRef50_Q5UQD9 Cluster: Putative DNA directed RNA polymerase su... 32 8.6
>UniRef50_Q7PVQ9 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=6; Coelomata|Rep: DNA-directed RNA polymerase
II subunit RPB11 - Anopheles gambiae (African malaria
mosquito)
Length = 117
Score = 154 bits (373), Expect = 2e-36
Identities = 71/81 (87%), Positives = 77/81 (95%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGNMIR+QLLKDP VLFAGYK+PHPLEHKFVLRIQTTS+Y+P EAFMNAITDL S
Sbjct: 37 KEDHTLGNMIRNQLLKDPNVLFAGYKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSLFEERF+EA+KEKKEG D
Sbjct: 97 ELSLFEERFREAMKEKKEGGD 117
Score = 64.9 bits (151), Expect = 1e-09
Identities = 30/37 (81%), Positives = 32/37 (86%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPPTFESFLLY+GEKK+ KE D KV NAAIFTV K
Sbjct: 1 MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNK 37
>UniRef50_Q59FR2 Cluster: MGC13098 protein variant; n=8;
Deuterostomia|Rep: MGC13098 protein variant - Homo
sapiens (Human)
Length = 180
Score = 124 bits (300), Expect = 1e-27
Identities = 54/70 (77%), Positives = 63/70 (90%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL
Sbjct: 58 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIR 117
Query: 435 ELSLFEERFK 464
ELSL EERF+
Sbjct: 118 ELSLLEERFR 127
Score = 51.6 bits (118), Expect = 1e-05
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 23 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTINK 58
>UniRef50_Q38859 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=6; Magnoliophyta|Rep: DNA-directed RNA
polymerase II subunit RPB11 - Arabidopsis thaliana
(Mouse-ear cress)
Length = 116
Score = 85.8 bits (203), Expect = 7e-16
Identities = 35/73 (47%), Positives = 53/73 (72%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHT+GN++R QL +D VLFAGY++PHPL++K ++RI TTS +P +A+ AI DL
Sbjct: 37 REDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDK 96
Query: 435 ELSLFEERFKEAI 473
EL + +F+ +
Sbjct: 97 ELDYLKNQFEAEV 109
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/37 (51%), Positives = 27/37 (72%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAP +E F++ +G KKV + DTK+ NAA FTV++
Sbjct: 1 MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVER 37
>UniRef50_P87123 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=1; Schizosaccharomyces pombe|Rep: DNA-directed
RNA polymerase II subunit RPB11 - Schizosaccharomyces
pombe (Fission yeast)
Length = 123
Score = 84.2 bits (199), Expect = 2e-15
Identities = 35/69 (50%), Positives = 48/69 (69%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTL NM+ +QLL D +VLFAGYK+PHPL H F+LR+QT D +P++ ++A L +
Sbjct: 36 KEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLIT 95
Query: 435 ELSLFEERF 461
L + F
Sbjct: 96 HLEEIKVNF 104
>UniRef50_Q54ZA7 Cluster: RNA polymerase II core subunit; n=2;
Dictyostelium discoideum|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 120
Score = 81.8 bits (193), Expect = 1e-14
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHT+GN+IR QL+ D ++FAGY++PHPLEH +RIQT ++ P E ++ L+
Sbjct: 37 KEDHTIGNLIRMQLIADQDIIFAGYRMPHPLEHNVNIRIQTNNNTNPLECVQKSMECLSR 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
E + E F E +++K+ D
Sbjct: 97 EFTSLENSFIEQVQKKRNVAD 117
Score = 46.4 bits (105), Expect = 5e-04
Identities = 21/37 (56%), Positives = 26/37 (70%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAP FE F+L DG KKV DTK+ NA++FT+ K
Sbjct: 1 MNAPDRFELFVLPDGAKKVTMVRDTKIPNASMFTILK 37
>UniRef50_A3FPR0 Cluster: RNA polymerase II, putative; n=1;
Cryptosporidium parvum Iowa II|Rep: RNA polymerase II,
putative - Cryptosporidium parvum Iowa II
Length = 115
Score = 81.8 bits (193), Expect = 1e-14
Identities = 38/81 (46%), Positives = 51/81 (62%)
Frame = +3
Query: 234 CSNIYS*KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 413
C + EDHTLGN+I QLL+DP V+FAGYK+PHPLE +RIQT + TP A N
Sbjct: 29 CGSFMIMLEDHTLGNLITTQLLRDPNVIFAGYKVPHPLEPLVQIRIQTRENTTPFVAIQN 88
Query: 414 AITDLTSELSLFEERFKEAIK 476
AI + E + FK++++
Sbjct: 89 AIKSIQMESQVILNSFKDSMR 109
>UniRef50_A4S056 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 115
Score = 81.0 bits (191), Expect = 2e-14
Identities = 32/73 (43%), Positives = 54/73 (73%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHT+GN++R +L K+P V+FAGYK PHP +H+ VL++ T ++ TP +A +A+T+L +
Sbjct: 37 REDHTIGNLLRMELHKNPDVVFAGYKNPHPTDHRIVLKVHTNANTTPVQALRDAVTNLRA 96
Query: 435 ELSLFEERFKEAI 473
E+ ++F + I
Sbjct: 97 EVGDLSQQFADEI 109
Score = 38.3 bits (85), Expect = 0.13
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKKRTTHLV 276
MN P + F+L +GE+K+ E DTKV NA F V +R H +
Sbjct: 1 MNQPSRADRFVLPEGERKLSYERDTKVENAGTF-VLQREDHTI 42
>UniRef50_Q5KMB4 Cluster: DNA-directed RNA polymerase ii 13.3 kDa
polypeptide, putative; n=1; Filobasidiella
neoformans|Rep: DNA-directed RNA polymerase ii 13.3 kDa
polypeptide, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 162
Score = 80.2 bits (189), Expect = 3e-14
Identities = 38/86 (44%), Positives = 54/86 (62%)
Frame = +3
Query: 237 SNIYS*KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNA 416
S I ++DHTLGNM+R QL+ DP VLFAGYK+PHPLE+ +L+IQT P EA A
Sbjct: 31 STIVIRRQDHTLGNMLRAQLMLDPTVLFAGYKVPHPLENDILLKIQTDERSNPAEALKRA 90
Query: 417 ITDLTSELSLFEERFKEAIKEKKEGL 494
+L + + +F++ K + G+
Sbjct: 91 CHELIRQTVHIKAQFQQQAKNIEMGM 116
>UniRef50_P38902 Cluster: DNA-directed RNA polymerase II subunit
RPB11; n=10; Saccharomycetales|Rep: DNA-directed RNA
polymerase II subunit RPB11 - Saccharomyces cerevisiae
(Baker's yeast)
Length = 120
Score = 80.2 bits (189), Expect = 3e-14
Identities = 36/70 (51%), Positives = 47/70 (67%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+IR +LL D KVLFA YK+ HP +F LRIQTT Y P++A NA + +
Sbjct: 37 KEDHTLGNLIRAELLNDRKVLFAAYKVEHPFFARFKLRIQTTEGYDPKDALKNACNSIIN 96
Query: 435 ELSLFEERFK 464
+L + F+
Sbjct: 97 KLGALKTNFE 106
Score = 42.7 bits (96), Expect = 0.006
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAP FE FLL +GE K++ + DTK NA + T +K
Sbjct: 1 MNAPDRFELFLLGEGESKLKIDPDTKAPNAVVITFEK 37
>UniRef50_Q4PC39 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 145
Score = 77.8 bits (183), Expect = 2e-13
Identities = 34/79 (43%), Positives = 49/79 (62%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGNM+RH +L +P VLF GYK+PHPLE K ++IQT TP +A L +
Sbjct: 38 KEDHTLGNMLRHAVLANPAVLFCGYKVPHPLEPKVFVKIQTDGSLTPTDALKQGSQKLIA 97
Query: 435 ELSLFEERFKEAIKEKKEG 491
++S + ++ ++ G
Sbjct: 98 QISSLKGAWRTEVQMSGAG 116
Score = 37.9 bits (84), Expect = 0.17
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 151 NAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
NAP F+ F+L EK+V+ EDTK+ NAA F K
Sbjct: 3 NAPNRFDLFILGPDEKRVEIVEDTKIPNAATFWFNK 38
>UniRef50_Q54ES6 Cluster: Putative RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: Putative RNA
polymerase III subunit - Dictyostelium discoideum AX4
Length = 116
Score = 74.5 bits (175), Expect = 2e-12
Identities = 34/82 (41%), Positives = 50/82 (60%)
Frame = +3
Query: 234 CSNIYS*KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 413
C+ EDHTLGN + + L+K+PKV F+GY IPHP +++ LRIQT S+ T QE+ +
Sbjct: 35 CATFIFTDEDHTLGNALHYVLMKNPKVDFSGYSIPHPSDNRMNLRIQTKSNITAQESLLQ 94
Query: 414 AITDLTSELSLFEERFKEAIKE 479
+TD+ E F A+ +
Sbjct: 95 GLTDIKDISRHIFETFNNALDQ 116
>UniRef50_UPI00004997FF Cluster: RNA polymerases II subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerases II
subunit - Entamoeba histolytica HM-1:IMSS
Length = 112
Score = 72.5 bits (170), Expect = 7e-12
Identities = 31/72 (43%), Positives = 47/72 (65%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHT GN++R LL++P VLFAGY+ PHPL + + I+T TP++A A+ D+
Sbjct: 34 KEDHTAGNILRVMLLRNPHVLFAGYRQPHPLNYVIEMTIRTDMTITPKQALEQAMDDVIH 93
Query: 435 ELSLFEERFKEA 470
E+ + + F+ A
Sbjct: 94 EIEIMQNEFEAA 105
>UniRef50_UPI0000E4658A Cluster: PREDICTED: similar to LOC494863
protein; n=1; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to LOC494863 protein -
Strongylocentrotus purpuratus
Length = 117
Score = 72.1 bits (169), Expect = 9e-12
Identities = 33/88 (37%), Positives = 50/88 (56%)
Frame = +3
Query: 234 CSNIYS*KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 413
C EDHTLGN +R+ ++KDP V F GY +PHP E++ RIQ T + F
Sbjct: 29 CVTFVMHNEDHTLGNALRYMVMKDPDVEFCGYSVPHPTENRINFRIQ-TKGAPAGDVFGK 87
Query: 414 AITDLTSELSLFEERFKEAIKEKKEGLD 497
+ +L+ ++ FK+ I++ KEG+D
Sbjct: 88 GLANLSEVCDHIQQTFKDTIQKFKEGMD 115
>UniRef50_P28000 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=18; Ascomycota|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 142
Score = 70.9 bits (166), Expect = 2e-11
Identities = 32/74 (43%), Positives = 45/74 (60%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTLGN +R+ ++K+P V F GY IPHP E+ +RIQT + T +A + DL
Sbjct: 67 EEDHTLGNALRYVIMKNPDVEFCGYSIPHPSENLLNIRIQTYGETTAVDALQKGLKDLMD 126
Query: 435 ELSLFEERFKEAIK 476
+ E +F E IK
Sbjct: 127 LCDVVESKFTEKIK 140
>UniRef50_A0BUX3 Cluster: Chromosome undetermined scaffold_13, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_13,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 129
Score = 69.7 bits (163), Expect = 5e-11
Identities = 31/85 (36%), Positives = 47/85 (55%)
Frame = +3
Query: 234 CSNIYS*KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 413
C +Y EDHT+GN+ R LLK +V F+GY+ HPL+H +++QT P +A
Sbjct: 40 CVKLYL--EDHTIGNLTRMNLLKQKEVTFSGYRQIHPLQHTIEIKVQTNGSIKPYDAIQK 97
Query: 414 AITDLTSELSLFEERFKEAIKEKKE 488
DL+ E EE + + EK++
Sbjct: 98 TFQDLSDEFKNLEEEWARKVAEKEK 122
>UniRef50_Q4N286 Cluster: RNA polymerase small subunit, putative;
n=2; Theileria|Rep: RNA polymerase small subunit,
putative - Theileria parva
Length = 92
Score = 68.9 bits (161), Expect = 8e-11
Identities = 31/75 (41%), Positives = 49/75 (65%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHTLGN +R L++ V+FAGY +PHP+E + +RIQTT E F++ + D+
Sbjct: 18 EDHTLGNTLRALLVERDDVVFAGYSVPHPMEPEMNVRIQTTGQ-PAVEVFLDCLDDMVKI 76
Query: 438 LSLFEERFKEAIKEK 482
+ E+F++A+KE+
Sbjct: 77 CDILTEKFEKAMKEQ 91
>UniRef50_Q4N0T0 Cluster: DNA-directed RNA polymerase II, putative;
n=2; Theileria|Rep: DNA-directed RNA polymerase II,
putative - Theileria parva
Length = 133
Score = 68.5 bits (160), Expect = 1e-10
Identities = 31/62 (50%), Positives = 45/62 (72%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHT G++IR +L KD +V F GY++PHPLE+K +RI+T +D P ++AIT+L +
Sbjct: 45 EDHTFGSLIRSKLSKDDRVTFVGYRMPHPLENKLEIRIRTKTD-NPFTVILSAITNLRTN 103
Query: 438 LS 443
LS
Sbjct: 104 LS 105
>UniRef50_Q7R0U9 Cluster: GLP_186_18224_18619; n=2; Giardia
intestinalis|Rep: GLP_186_18224_18619 - Giardia lamblia
ATCC 50803
Length = 131
Score = 68.1 bits (159), Expect = 1e-10
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 8/82 (9%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT--------TSDYTPQEAFMN 413
+D+T+G+++R +LL P+V FAG K PHPLE K V+R+QT T TP+ F +
Sbjct: 39 QDYTIGHILRKELLSMPQVTFAGMKTPHPLESKIVIRLQTNPSGFLSDTIQATPENCFQS 98
Query: 414 AITDLTSELSLFEERFKEAIKE 479
A+T +T + L ++ F A+ +
Sbjct: 99 ALTKITESMELIKKTFMAAVDD 120
>UniRef50_A4I2U7 Cluster: DNA-directed RNA polymerase II-like
protein; n=6; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II-like protein - Leishmania infantum
Length = 134
Score = 67.7 bits (158), Expect = 2e-10
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 6/82 (7%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYT------PQEAFMNA 416
KEDHTL N++R +L + P V AGY++PHP +H LR+QT S+ T P++A +A
Sbjct: 46 KEDHTLANLLRMKLHESPFVQIAGYRVPHPTKHNVELRVQTASNGTDAPVPAPKKALQDA 105
Query: 417 ITDLTSELSLFEERFKEAIKEK 482
I +L +FEE+ + + K
Sbjct: 106 INGCLKDLEVFEEQLRREAQLK 127
>UniRef50_Q09177 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=5; Ascomycota|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 -
Schizosaccharomyces pombe (Fission yeast)
Length = 125
Score = 67.7 bits (158), Expect = 2e-10
Identities = 31/73 (42%), Positives = 41/73 (56%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN +R+ ++K+P+V F GY IPHP E K RIQT T + + DL
Sbjct: 41 KEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLID 100
Query: 435 ELSLFEERFKEAI 473
E+F E +
Sbjct: 101 LCDAVTEKFTEQL 113
>UniRef50_Q0UWS5 Cluster: Putative uncharacterized protein; n=1;
Phaeosphaeria nodorum|Rep: Putative uncharacterized
protein - Phaeosphaeria nodorum (Septoria nodorum)
Length = 216
Score = 66.9 bits (156), Expect = 3e-10
Identities = 31/77 (40%), Positives = 44/77 (57%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I +LLK P + F+ YK+PHPL F LR+ T TP++A + +
Sbjct: 123 KEDHTLGNLISQRLLKYPYITFSAYKVPHPLFATFELRVSTDGSITPKDAIIACCRQVVQ 182
Query: 435 ELSLFEERFKEAIKEKK 485
+L + F+ KK
Sbjct: 183 DLEDLKRSFQTEWLGKK 199
>UniRef50_A0E1A2 Cluster: Chromosome undetermined scaffold_73, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_73,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 122
Score = 66.5 bits (155), Expect = 4e-10
Identities = 29/75 (38%), Positives = 48/75 (64%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHTLGN +R+ L P V F GY +PHP E+K +R+QT ++ T ++ + + L+
Sbjct: 49 EDHTLGNSLRYILANQPNVEFCGYSLPHPSENKMNMRLQTVNE-TKEKIMNDGLKCLSQI 107
Query: 438 LSLFEERFKEAIKEK 482
+ E++FK+A++ K
Sbjct: 108 CDIIEDKFKKALENK 122
>UniRef50_Q9Y2S0 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=13; Eumetazoa|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Homo sapiens
(Human)
Length = 133
Score = 66.1 bits (154), Expect = 6e-10
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTLGN +R+ ++K+P+V F GY HP E K LRIQT E F + +L +
Sbjct: 46 EEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMN 105
Query: 435 ELSLFEERFKEAIKEKKE 488
++F+ +IK+ K+
Sbjct: 106 VCQHVLDKFEASIKDYKD 123
>UniRef50_Q6DRI4 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC2; n=6; Euteleostomi|Rep: DNA-directed RNA
polymerases I and III subunit RPAC2 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 112
Score = 64.5 bits (150), Expect = 2e-09
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTLGN +R+ ++K V F GY I HP E K RIQT E N + +LT
Sbjct: 29 EEDHTLGNSLRYMIMKSQDVEFCGYSITHPSESKINFRIQTRDGVPASEPLRNGLNNLTD 88
Query: 435 ----ELSLFEERFKEAIKEKKEGL 494
L FE R KE KE++E +
Sbjct: 89 VCKHVLQTFEARMKE-FKEQEESM 111
>UniRef50_Q7RYP4 Cluster: Putative uncharacterized protein
NCU00419.1; n=3; Sordariomycetes|Rep: Putative
uncharacterized protein NCU00419.1 - Neurospora crassa
Length = 156
Score = 64.1 bits (149), Expect = 2e-09
Identities = 30/74 (40%), Positives = 43/74 (58%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E+HTLGN +R+ ++K+P V F Y IPHP E K +RIQT T EA + D+
Sbjct: 73 ENHTLGNALRYVIMKNPDVEFCAYAIPHPSEAKMNVRIQTYEGTTAVEALRKGLRDIQDL 132
Query: 438 LSLFEERFKEAIKE 479
+ ++F EA K+
Sbjct: 133 CDVVSDKFLEARKD 146
>UniRef50_A4R2Q3 Cluster: Putative uncharacterized protein; n=2;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 130
Score = 64.1 bits (149), Expect = 2e-09
Identities = 30/69 (43%), Positives = 38/69 (55%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGNM+ L + P VL AGYK+ HP +F LRIQT TP+ ++A +
Sbjct: 37 KEDHTLGNMLTEHLKQHPNVLMAGYKVSHPNVPEFFLRIQTDGKVTPKACLLDACRTILH 96
Query: 435 ELSLFEERF 461
L F
Sbjct: 97 SLGQIRTEF 105
Score = 38.7 bits (86), Expect = 0.100
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAP FE FLL GE+K+ + +T ++N + FT KK
Sbjct: 1 MNAPDRFELFLLEPGEEKLTETINTSMSNTSDFTFKK 37
>UniRef50_Q4PFC9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 164
Score = 63.7 bits (148), Expect = 3e-09
Identities = 29/73 (39%), Positives = 45/73 (61%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTLGN +R+ ++KDP+V F GY PHP E+K LRIQ + + +A +AI +L
Sbjct: 40 EEDHTLGNSLRYIIMKDPRVEFCGYSNPHPSENKIHLRIQMYDNASALDALRDAIENLDQ 99
Query: 435 ELSLFEERFKEAI 473
+ E + ++
Sbjct: 100 LFAAIGEAYDRSL 112
>UniRef50_Q9C256 Cluster: Related to DNA-directed RNA polymerase
13.3K chain; n=3; Sordariales|Rep: Related to
DNA-directed RNA polymerase 13.3K chain - Neurospora
crassa
Length = 133
Score = 63.3 bits (147), Expect = 4e-09
Identities = 30/73 (41%), Positives = 41/73 (56%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN++ L + P VL AGYKI HP + +RIQT TP+EA + A L +
Sbjct: 37 KEDHTLGNLLAEHLKQAPHVLMAGYKIAHPNVPELFIRIQTDGSITPREALVGACKQLVA 96
Query: 435 ELSLFEERFKEAI 473
F++ +
Sbjct: 97 MYGQLGREFQKEL 109
Score = 40.7 bits (91), Expect = 0.025
Identities = 18/37 (48%), Positives = 26/37 (70%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAP FE FLL DGEKK++++ T ++N + F + K
Sbjct: 1 MNAPDRFELFLLQDGEKKIEEKVFTGMSNTSDFKILK 37
>UniRef50_A6RF11 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 137
Score = 62.5 bits (145), Expect = 7e-09
Identities = 31/72 (43%), Positives = 40/72 (55%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN +R+ ++K+P+V F GY +PHP E K LRIQT + DL +
Sbjct: 56 KEDHTLGNALRYVIMKNPEVEFCGYTMPHPSEAKMNLRIQTFDTTNVFSVLEKGLDDLMN 115
Query: 435 ELSLFEERFKEA 470
E F EA
Sbjct: 116 LCDTVTETFIEA 127
>UniRef50_P34476 Cluster: Probable DNA-directed RNA polymerases I
and III subunit RPAC2; n=2; Caenorhabditis|Rep: Probable
DNA-directed RNA polymerases I and III subunit RPAC2 -
Caenorhabditis elegans
Length = 144
Score = 62.1 bits (144), Expect = 9e-09
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHT+GN I+H L + +V F GY +PHPLE K + R+QT E A +
Sbjct: 67 EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQ 126
Query: 435 ELSLFEERFKEAIKEKK 485
S +F+E+ ++ +
Sbjct: 127 IFSTIRGKFEESYEQSQ 143
>UniRef50_Q4XS21 Cluster: Probable DNA-directed RNA polymerase II
subunit RPB11; n=5; Plasmodium|Rep: Probable
DNA-directed RNA polymerase II subunit RPB11 -
Plasmodium chabaudi
Length = 126
Score = 60.9 bits (141), Expect = 2e-08
Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%)
Frame = +3
Query: 240 NIYS*K-EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNA 416
NI++ K EDHT+GN+I+ L +DPKV FA Y+ PHPL++ + I+ Y + +
Sbjct: 36 NIFTIKLEDHTIGNLIKQSLCQDPKVTFAAYRQPHPLQNAIEITIR-PKGYAGVKLLSDN 94
Query: 417 ITDLTSELSLFEERFKEAIKEKKE 488
+ + +++S E F +++ KE
Sbjct: 95 VHSILNQVSTLRETFANRVQKYKE 118
>UniRef50_Q2QWI0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein, expressed; n=2;
Magnoliophyta|Rep: RNA polymerase Rpb3/Rpb11
dimerisation domain containing protein, expressed -
Oryza sativa subsp. japonica (Rice)
Length = 108
Score = 60.5 bits (140), Expect = 3e-08
Identities = 26/58 (44%), Positives = 39/58 (67%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDL 428
+EDHTL N +R L +DP+V F GY IPHP ++K +R+QTT D ++ +++ DL
Sbjct: 18 EEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGD-PAKDVLKDSLQDL 74
>UniRef50_Q5KMK6 Cluster: DNA-directed RNA polymerase, putative;
n=1; Filobasidiella neoformans|Rep: DNA-directed RNA
polymerase, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 155
Score = 60.5 bits (140), Expect = 3e-08
Identities = 27/74 (36%), Positives = 44/74 (59%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTLGN +R ++KDP+V F GY PHP E K LRIQ + + + A+++L
Sbjct: 46 QEDHTLGNALRWIIMKDPEVEFCGYTAPHPSEPKIHLRIQMYENQSAVDCLRRALSNLRD 105
Query: 435 ELSLFEERFKEAIK 476
L+ + + +++
Sbjct: 106 LLNAVNDSYTSSLQ 119
>UniRef50_Q22RW2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Tetrahymena thermophila SB210
Length = 150
Score = 59.7 bits (138), Expect = 5e-08
Identities = 29/74 (39%), Positives = 40/74 (54%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHTLGN +R+ L+K V F GY IPHP E+K LR+QT E + L
Sbjct: 68 EDHTLGNTVRYMLVKRKDVEFCGYTIPHPSENKMNLRLQTIKK-NSNEVLKEGLDSLAGL 126
Query: 438 LSLFEERFKEAIKE 479
+ ++F A+K+
Sbjct: 127 CDVLNDKFDAAMKK 140
>UniRef50_Q96YA7 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit L - Sulfolobus tokodaii
Length = 93
Score = 59.7 bits (138), Expect = 5e-08
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E+HT+GN+++ LLK P V FA Y PHPL +L+I T +P+EA + AI +
Sbjct: 20 EEHTVGNLLKGYLLKVPGVKFASYSKPHPLIDSIILKIMTDGSISPKEALVKAIELAEED 79
Query: 438 LSLFEERFKEAIK 476
+ F E K K
Sbjct: 80 TNKFIEEVKSIEK 92
>UniRef50_Q7R4U8 Cluster: GLP_440_20098_20403; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_440_20098_20403 - Giardia lamblia
ATCC 50803
Length = 101
Score = 58.0 bits (134), Expect = 2e-07
Identities = 30/71 (42%), Positives = 42/71 (59%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHTLGN IR+ L +P V FAGY +PHP E K LRIQ+ + + + + A + +
Sbjct: 13 EDHTLGNCIRYCLTCNPAVSFAGYSVPHPAEPKLNLRIQSDTQ-SATDCLLQAADLMYAI 71
Query: 438 LSLFEERFKEA 470
S+ +R EA
Sbjct: 72 ASVLRQRLAEA 82
>UniRef50_A2DKG2 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 101
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/71 (36%), Positives = 39/71 (54%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E +T+GN +R +L++PKV F GY +PHP E K LR+Q D + ++ I+D
Sbjct: 25 ETYTMGNALRQTILQNPKVNFCGYTVPHPAETKVALRVQADDDEKITDIVLSGISDFKQW 84
Query: 438 LSLFEERFKEA 470
+ E F A
Sbjct: 85 CNNTETEFDNA 95
>UniRef50_A3DM82 Cluster: RNA polymerase, dimerisation; n=1;
Staphylothermus marinus F1|Rep: RNA polymerase,
dimerisation - Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1)
Length = 91
Score = 57.6 bits (133), Expect = 2e-07
Identities = 26/75 (34%), Positives = 44/75 (58%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
ED TLGN+I + +K PKV++A Y+IPHPL++ R++ + P + ++T
Sbjct: 20 EDDTLGNLIAKEAMKHPKVVYASYRIPHPLQN----RLEIIINVEPGANISEVLLEITEN 75
Query: 438 LSLFEERFKEAIKEK 482
+ F FK+ ++EK
Sbjct: 76 IRKFLREFKKEVEEK 90
>UniRef50_Q42483 Cluster: Arabidopsis thaliana RNA polymerase I(A)
and III(C) 14 kDa subunit (RNA polymerase I(A) and
III(C) 14 kDa subunit); n=2; Arabidopsis thaliana|Rep:
Arabidopsis thaliana RNA polymerase I(A) and III(C) 14
kDa subunit (RNA polymerase I(A) and III(C) 14 kDa
subunit) - Arabidopsis thaliana (Mouse-ear cress)
Length = 122
Score = 57.2 bits (132), Expect = 3e-07
Identities = 30/78 (38%), Positives = 43/78 (55%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTL N +R L +DP+V A Y IPHP + +R+QTT D +E F +A +L
Sbjct: 18 EEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGD-PAREVFKDACQELMQ 76
Query: 435 ELSLFEERFKEAIKEKKE 488
F +A+ E K+
Sbjct: 77 MNRHVRSVFDKAVAEYKD 94
>UniRef50_Q4Q860 Cluster: DNA-directed RNA polymerase-like protein;
n=7; Trypanosomatidae|Rep: DNA-directed RNA
polymerase-like protein - Leishmania major
Length = 137
Score = 56.8 bits (131), Expect = 4e-07
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDY 389
EDHTLGN +RH L+++ V AGY IPHPLE K +L +Q SDY
Sbjct: 55 EDHTLGNPLRHVLMQNAAVTSAGYAIPHPLEPKMLLHVQ-ASDY 97
>UniRef50_A7AT13 Cluster: RNA polymerase small subunit protein,
putative; n=1; Babesia bovis|Rep: RNA polymerase small
subunit protein, putative - Babesia bovis
Length = 96
Score = 56.8 bits (131), Expect = 4e-07
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHTLGN +R L++ V FAGY +PHP++ + +RIQTT + F+ + DL
Sbjct: 18 EDHTLGNAVRTLLVEREDVFFAGYSVPHPMQPEVNIRIQTTGK-PAVKIFVECLDDLVEV 76
Query: 438 LSLFEERFKEA 470
++ + F +A
Sbjct: 77 CNVLTKAFIDA 87
>UniRef50_A6S183 Cluster: Putative uncharacterized protein; n=2;
Sclerotiniaceae|Rep: Putative uncharacterized protein -
Botryotinia fuckeliana B05.10
Length = 110
Score = 56.8 bits (131), Expect = 4e-07
Identities = 24/41 (58%), Positives = 30/41 (73%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT 377
KEDHTLGN +R+ ++K+P V F GY IPHP E +RIQT
Sbjct: 68 KEDHTLGNALRYIIMKNPDVEFCGYSIPHPSEELMNIRIQT 108
>UniRef50_A2DQ63 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 124
Score = 56.4 bits (130), Expect = 5e-07
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYT-PQEAFMNAITDLT 431
KEDHTLGN++ QLL + ++LFAGY+I HP + +R++ + + P+E AI L
Sbjct: 42 KEDHTLGNLLTDQLLTENRILFAGYRIEHPTKDLIKIRVKASQNVNHPKELIDPAIEALK 101
Query: 432 SELSLFEERF 461
++++ + F
Sbjct: 102 TKIAGLQSSF 111
>UniRef50_A6NJ25 Cluster: Uncharacterized protein ENSP00000330898;
n=4; Homo sapiens|Rep: Uncharacterized protein
ENSP00000330898 - Homo sapiens (Human)
Length = 117
Score = 56.4 bits (130), Expect = 5e-07
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
+NAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>UniRef50_A5K177 Cluster: RNA polymerase small subunit, putative;
n=5; Plasmodium|Rep: RNA polymerase small subunit,
putative - Plasmodium vivax
Length = 97
Score = 55.2 bits (127), Expect = 1e-06
Identities = 28/73 (38%), Positives = 42/73 (57%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHTLGN +R LL+ V FAGY +PHP + + LRIQTT + +++ DL++
Sbjct: 23 EDHTLGNCLRCILLQKEGVEFAGYTVPHPTQAEINLRIQTTGE-PAINILKDSLDDLSNI 81
Query: 438 LSLFEERFKEAIK 476
+ +F +K
Sbjct: 82 CDIMLNKFDSVVK 94
>UniRef50_Q01D46 Cluster: Trithorax-like; n=3; Ostreococcus|Rep:
Trithorax-like - Ostreococcus tauri
Length = 2007
Score = 54.8 bits (126), Expect = 1e-06
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 2/73 (2%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT--TSDYTPQEAFMNAITDLT 431
EDHTLGN +R+ L +P V GY PHP+E + +R+QT T + A +A+ D+
Sbjct: 1927 EDHTLGNALRYVLNANPSVTLCGYSAPHPMERRVNVRVQTHGREGATARGAMRDALLDVI 1986
Query: 432 SELSLFEERFKEA 470
S E +++A
Sbjct: 1987 SVCDHVHESYEKA 1999
>UniRef50_A0E8B2 Cluster: Chromosome undetermined scaffold_82, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_82,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 97
Score = 54.8 bits (126), Expect = 1e-06
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
ED T+GN++R LLK +V F+ + HPL+H ++++T P +A + DL+ E
Sbjct: 12 EDRTIGNLLRTNLLKQKEVTFSRQRQIHPLQHTIEIKVKTKGTIKPYDAIEKTLKDLSEE 71
Query: 438 LSLFEERFKEA--IKEKKEGL 494
E+ + A + EK++ L
Sbjct: 72 FKNLEDEWARARKVAEKEKHL 92
>UniRef50_A7AN34 Cluster: Putative uncharacterized protein; n=1;
Babesia bovis|Rep: Putative uncharacterized protein -
Babesia bovis
Length = 92
Score = 52.0 bits (119), Expect = 1e-05
Identities = 23/71 (32%), Positives = 43/71 (60%)
Frame = +3
Query: 270 LGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLF 449
LG ++ +L KD +V F GY++PHPLE+K +R++ D +P +NAI+ + +
Sbjct: 19 LGQGVKKRLSKDERVAFVGYRMPHPLENKLEIRLRCKVD-SPFTVMLNAISSVRLNIGHL 77
Query: 450 EERFKEAIKEK 482
++ + ++EK
Sbjct: 78 KKVYLSTLREK 88
>UniRef50_UPI0000499BD5 Cluster: RNA polymerases II subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: RNA polymerases II
subunit - Entamoeba histolytica HM-1:IMSS
Length = 85
Score = 51.6 bits (118), Expect = 1e-05
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQT--TSDYTPQEAFMNAITDLT 431
EDHT N +RH + P GY IPHP + K V RIQT +S+ TP + + +L
Sbjct: 12 EDHTFANPLRHVIANLPDTDLCGYSIPHPSDTKVVFRIQTQKSSNKTPFDVMEDGCKELI 71
Query: 432 SELSLFEERFKEA 470
++ E ++ A
Sbjct: 72 RQMDELNELYEAA 84
>UniRef50_Q9VIZ0 Cluster: Probable DNA-directed RNA polymerases I
and III subunit RPAC2; n=5; Diptera|Rep: Probable
DNA-directed RNA polymerases I and III subunit RPAC2 -
Drosophila melanogaster (Fruit fly)
Length = 105
Score = 47.6 bits (108), Expect = 2e-04
Identities = 21/43 (48%), Positives = 27/43 (62%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSD 386
E HTLGN ++ + + P+V F GY IPHP E K RIQ+ D
Sbjct: 25 EGHTLGNALKTIIARYPEVDFCGYTIPHPTEQKLHFRIQSRRD 67
>UniRef50_Q8SS03 Cluster: DNA-DIRECTED RNA POLYMERASE II; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE II - Encephalitozoon cuniculi
Length = 96
Score = 46.4 bits (105), Expect = 5e-04
Identities = 19/69 (27%), Positives = 36/69 (52%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E HTLGN++ +LL+D + LF+ Y++ HP + LR+ D ++ + + + E
Sbjct: 26 ETHTLGNLLSEELLEDKRCLFSAYRVEHPADTHVFLRLTADRDCQVRDLLLETLKRVEEE 85
Query: 438 LSLFEERFK 464
+ + K
Sbjct: 86 TTSLMNQLK 94
>UniRef50_A2BNA1 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase subunit L - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 105
Score = 46.0 bits (104), Expect = 7e-04
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
ED T+ N+I ++ P V++A Y I HPL V+ + T P + + D+ ++
Sbjct: 24 EDQTIANLIAKYAIRKPGVVYASYIISHPLVSNPVIVLSTDGSRDPLDVLEEVLKDIITD 83
Query: 438 LSLFEERFKEAIK 476
F E F A++
Sbjct: 84 AKKFIEEFDRALE 96
>UniRef50_Q98SA6 Cluster: Dna directed RNA polymerase II 13.6 kDa
chain; n=1; Guillardia theta|Rep: Dna directed RNA
polymerase II 13.6 kDa chain - Guillardia theta
(Cryptomonas phi)
Length = 108
Score = 43.6 bits (98), Expect = 0.003
Identities = 23/65 (35%), Positives = 36/65 (55%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
ED T+G ++ ++L VLF GYK HPL++ L+I+T S P AI ++ +
Sbjct: 37 EDATMGEILVYKLENHKNVLFCGYKKLHPLDNNIFLKIKTNSFTDPVLELEWAIKEIYVD 96
Query: 438 LSLFE 452
LS +
Sbjct: 97 LSYIQ 101
>UniRef50_UPI0000D55E69 Cluster: PREDICTED: similar to CG10685-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG10685-PA - Tribolium castaneum
Length = 105
Score = 42.3 bits (95), Expect = 0.008
Identities = 23/59 (38%), Positives = 30/59 (50%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
E HTLGN +R + P V F Y +PHP+E LRIQ S +A + DL +
Sbjct: 24 EGHTLGNALRCVISGYPDVEFCAYTVPHPMECSMHLRIQMRSG-RAVDALKRGLEDLAA 81
>UniRef50_Q9V2M4 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Thermococcaceae|Rep: DNA-directed RNA polymerase
subunit L - Pyrococcus abyssi
Length = 95
Score = 42.3 bits (95), Expect = 0.008
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHP--LEHKFVLRIQTTSDYTPQEAFMNAITDLT 431
EDHT N++ L ++P V F Y I HP + K R+ T TP++A A +
Sbjct: 20 EDHTFANLLTETLRENPHVKFVAYTIEHPILMARKPRFRVVTDGKITPEKALEEAAKKIF 79
Query: 432 SELSLFEERFKEAIK 476
+ +++AIK
Sbjct: 80 DRAKEVLDAWEKAIK 94
>UniRef50_A5UMY3 Cluster: DNA-directed RNA polymerase, subunit L,
RpoL; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed RNA polymerase, subunit L, RpoL -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 96
Score = 41.9 bits (94), Expect = 0.011
Identities = 21/72 (29%), Positives = 38/72 (52%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E H + N +RH L++D V +A Y I HPL + + I+T P++ A + L +
Sbjct: 25 ESHGVCNALRHILMQDSDVEYAVYNIDHPLTGEPNMTIKTKRGKRPRKVLKKAASQLKDD 84
Query: 438 LSLFEERFKEAI 473
+ F++ +E +
Sbjct: 85 AADFKKLIEETL 96
>UniRef50_O30032 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit L - Archaeoglobus fulgidus
Length = 86
Score = 40.3 bits (90), Expect = 0.033
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNA 416
E HT N+++H L++D V+ A Y IPHPL + + I+ TS P EA A
Sbjct: 20 EGHTYLNLLQHYLVEDEDVIVARYNIPHPLIGEPEIYIK-TSGVDPLEAVKRA 71
>UniRef50_A0RXH5 Cluster: Putative uncharacterized protein; n=1;
Cenarchaeum symbiosum|Rep: Putative uncharacterized
protein - Cenarchaeum symbiosum
Length = 94
Score = 38.3 bits (85), Expect = 0.13
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +3
Query: 279 MIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEER 458
+++H+LLK + FAG + H L + +R+ T+S +P +A +A S E+
Sbjct: 27 IVQHELLKKSGIEFAGVILKHQLTSEIWMRVNTSSG-SPVKAITDAADASVSTFGDLEKL 85
Query: 459 FKEAIKEKK 485
FK IK K
Sbjct: 86 FKSKIKVDK 94
>UniRef50_A1RX43 Cluster: Transcriptional regulator, Fis family;
n=1; Thermofilum pendens Hrk 5|Rep: Transcriptional
regulator, Fis family - Thermofilum pendens (strain Hrk
5)
Length = 101
Score = 37.5 bits (83), Expect = 0.23
Identities = 22/66 (33%), Positives = 35/66 (53%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E HTL N++ +L + P V A Y++ HPL + L ++T P EA A+ L ++
Sbjct: 31 EGHTLLNLLVDELNRIPDVE-ATYRVDHPLLNVAHLLVRTKGSKQPLEAIREAVESLRAK 89
Query: 438 LSLFEE 455
L + E
Sbjct: 90 LKVVAE 95
>UniRef50_Q9YEZ1 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit L - Aeropyrum pernix
Length = 99
Score = 36.7 bits (81), Expect = 0.40
Identities = 20/78 (25%), Positives = 35/78 (44%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
EDHTLG ++ + + A Y+ HP+E + ++ D +E A L
Sbjct: 21 EDHTLGTLLVEAIKRVSNPKLAYYEAVHPMEDIIQVYVKYEDDVDIKEVLRKASDYLLEV 80
Query: 438 LSLFEERFKEAIKEKKEG 491
+ F R+ EA++ + G
Sbjct: 81 IGDFRRRYLEALERRGGG 98
>UniRef50_O27372 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Methanothermobacter thermautotrophicus str. Delta
H|Rep: DNA-directed RNA polymerase subunit L -
Methanobacterium thermoautotrophicum
Length = 85
Score = 36.3 bits (80), Expect = 0.53
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E HTL N++R L++D KV A Y I HP+ + L I+ S +A + D E
Sbjct: 18 ETHTLCNVLRSILMEDEKVKAAAYSIDHPIVGEPQLYIRAGSPKKSLKAAAETLRDRCDE 77
>UniRef50_A3HA23 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Caldivirga maquilingensis IC-167|Rep: DNA-directed
RNA polymerase subunit L - Caldivirga maquilingensis
IC-167
Length = 104
Score = 35.5 bits (78), Expect = 0.93
Identities = 17/65 (26%), Positives = 36/65 (55%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
ED+T+ + + +L+DP+V FA + + HPL L+++T P + +A+ + ++
Sbjct: 23 EDYTVMSPLLTYILQDPEVEFATFDMDHPLLRNITLKLRTKGK-DPLKVLEDAVNRILND 81
Query: 438 LSLFE 452
+ E
Sbjct: 82 IGELE 86
>UniRef50_Q2NE51 Cluster: RpoL; n=1; Methanosphaera stadtmanae DSM
3091|Rep: RpoL - Methanosphaera stadtmanae (strain DSM
3091)
Length = 88
Score = 35.1 bits (77), Expect = 1.2
Identities = 20/74 (27%), Positives = 40/74 (54%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E HT+ N++R +L+ +V A Y I HPL + I++++ P+++ NA ++ E
Sbjct: 18 ESHTICNILRKRLMDYDEVDAAAYDITHPLIGQPEFEIRSSN---PRKSMTNAAKEVKEE 74
Query: 438 LSLFEERFKEAIKE 479
F++ + +E
Sbjct: 75 ALSFKDALIKGFEE 88
>UniRef50_Q7RS64 Cluster: Plasmodium vivax PV1H14095_P-related; n=3;
Plasmodium (Vinckeia)|Rep: Plasmodium vivax
PV1H14095_P-related - Plasmodium yoelii yoelii
Length = 1249
Score = 34.7 bits (76), Expect = 1.6
Identities = 18/49 (36%), Positives = 29/49 (59%)
Frame = +1
Query: 67 IEQTKNRFIRNSL*YF*SKKFDNEFVVMNAPPTFESFLLYDGEKKVQKE 213
+ Q+ NRF + + Y KF+N+F++ + E FLLYD ++K KE
Sbjct: 482 LNQSGNRFGKENNYYDIQNKFNNQFLI-DQTNNNECFLLYDSDEKTYKE 529
>UniRef50_A7DQB4 Cluster: Putative uncharacterized protein; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: Putative
uncharacterized protein - Candidatus Nitrosopumilus
maritimus SCM1
Length = 92
Score = 34.7 bits (76), Expect = 1.6
Identities = 14/35 (40%), Positives = 25/35 (71%)
Frame = +3
Query: 279 MIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTS 383
+I+H+LLK+ + FAG + HPL ++ +RI ++S
Sbjct: 27 LIQHELLKESNIDFAGVIVKHPLTNECWMRINSSS 61
>UniRef50_UPI00004487EA Cluster: FAST kinase domain-containing
protein 1.; n=3; Amniota|Rep: FAST kinase
domain-containing protein 1. - Gallus gallus
Length = 829
Score = 34.3 bits (75), Expect = 2.1
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +3
Query: 339 HPLEHKFVLRIQTTSDYTP---QEAFMNAITDLTSELSLFE 452
HPLE F+L + + +Y P +E F + I LTS LS FE
Sbjct: 553 HPLEMYFILHLFSVLNYDPPANEEFFQSCIQHLTSNLSCFE 593
>UniRef50_Q8ZW46 Cluster: DNA-directed RNA polymerase subunit L;
n=4; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit L - Pyrobaculum aerophilum
Length = 92
Score = 33.9 bits (74), Expect = 2.8
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E +TL + + L DP V + + + HPL+ +++ P EA A+ + S+
Sbjct: 24 ETYTLFSPLVEYLSNDPDVEYVQFDVDHPLQENAYFKLKVKRG-NPLEAIQRAVNAILSD 82
Query: 438 LSLFEERF 461
L E F
Sbjct: 83 LEELERGF 90
>UniRef50_Q9PM80 Cluster: DNA-directed RNA polymerase subunit alpha;
n=16; Epsilonproteobacteria|Rep: DNA-directed RNA
polymerase subunit alpha - Campylobacter jejuni
Length = 337
Score = 33.9 bits (74), Expect = 2.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 339 HPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEE 455
+P K VL + T TP EAF NA+ + +LS+F++
Sbjct: 191 NPDYEKVVLTVTTDGQITPNEAFQNALEAMYKQLSVFDK 229
>UniRef50_A0DAY0 Cluster: Chromosome undetermined scaffold_43, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_43,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 983
Score = 33.5 bits (73), Expect = 3.7
Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 381 SDYTPQEAFMN-AITDLTSELSLFEERFKEAIKEKKE 488
+DY Q A M+ ITDL S+LS RF+E +K+K E
Sbjct: 403 NDYAKQIADMDDEITDLKSKLSALRARFQELVKQKVE 439
>UniRef50_Q57832 Cluster: DNA-directed RNA polymerase subunit L;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit L - Methanococcus jannaschii
Length = 99
Score = 33.5 bits (73), Expect = 3.7
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEH 353
EDH+L N+++ LL V A Y I HPL H
Sbjct: 20 EDHSLPNLLKDILLTKEGVKMASYSIDHPLLH 51
>UniRef50_Q5CP80 Cluster: Putative uncharacterized protein; n=2;
Cryptosporidium|Rep: Putative uncharacterized protein -
Cryptosporidium hominis
Length = 98
Score = 32.7 bits (71), Expect = 6.5
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 303 DPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELS 443
+P FAGY IPHP LRI+T S+ + N DL + LS
Sbjct: 3 NPNTTFAGYAIPHPSISTMNLRIETISNVEVDDKNYN--LDLKAALS 47
>UniRef50_Q68RU8 Cluster: Putative membrane protein ycf1; n=6;
asterids|Rep: Putative membrane protein ycf1 - Panax
ginseng (Korean ginseng)
Length = 1919
Score = 32.7 bits (71), Expect = 6.5
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +3
Query: 351 HKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEG 491
H +I++T +Y+P+E + +TD TS + ++ K KEKK+G
Sbjct: 1074 HNSFNKIRSTDNYSPREKKIKNLTDRTSPI---RKKIKSITKEKKKG 1117
>UniRef50_Q74MN9 Cluster: DNA-directed RNA polymerase subunit L;
n=1; Nanoarchaeum equitans|Rep: DNA-directed RNA
polymerase subunit L - Nanoarchaeum equitans
Length = 96
Score = 32.7 bits (71), Expect = 6.5
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSE 437
E HTL N ++ V A Y I HPL+ I+T ++A + A+ L E
Sbjct: 25 ETHTLFNALKEIAYTINGVKKAAYFIEHPLKDNNYFIIETDGSIKARDALIQALKKLKEE 84
Query: 438 LSLFEE 455
L F++
Sbjct: 85 LLNFKD 90
>UniRef50_Q5UQD9 Cluster: Putative DNA directed RNA polymerase
subunit R470; n=1; Acanthamoeba polyphaga mimivirus|Rep:
Putative DNA directed RNA polymerase subunit R470 -
Mimivirus
Length = 357
Score = 32.3 bits (70), Expect = 8.6
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Frame = +3
Query: 258 EDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVL--RIQTTSDYTPQEAFMNAITDL 428
EDHTLG ++ + L + V AGY +PH L K ++ ++ S+ P + + IT L
Sbjct: 285 EDHTLGTILENVLQQCEYVEKAGYCMPHLLIDKILVSYKLYDDSEIGPIKVLNDCITYL 343
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 448,444,972
Number of Sequences: 1657284
Number of extensions: 7708987
Number of successful extensions: 17591
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 17176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17585
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 40658285374
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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