Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10466
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subun...    84   1e-17
SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymera...    68   1e-12
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    27   1.5  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   6.2  

>SPAC3A12.07 |rpb11||DNA-directed RNA polymerase II complex subunit
           Rpb11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 123

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 35/69 (50%), Positives = 48/69 (69%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
           KEDHTL NM+ +QLL D +VLFAGYK+PHPL H F+LR+QT  D +P++  ++A   L +
Sbjct: 36  KEDHTLANMLANQLLSDERVLFAGYKVPHPLNHNFILRVQTVEDCSPKQVIVDAAKSLIT 95

Query: 435 ELSLFEERF 461
            L   +  F
Sbjct: 96  HLEEIKVNF 104



 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
           MN P  +E   L  G  KV  E D+K  NAA+ T++K
Sbjct: 1   MNQPERYELIELM-GLPKVTYELDSKSPNAAVVTLEK 36


>SPAC1687.01 |rpc19|rpa17, SPAPYUL23.01|DNA-directed RNA polymerase
           I and III subunit Rpc19 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 125

 Score = 67.7 bits (158), Expect = 1e-12
 Identities = 31/73 (42%), Positives = 41/73 (56%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
           KEDHTLGN +R+ ++K+P+V F GY IPHP E K   RIQT    T  +     + DL  
Sbjct: 41  KEDHTLGNSLRYVIMKNPEVEFCGYSIPHPSEAKMNFRIQTAPSTTAVDVLRKGLDDLID 100

Query: 435 ELSLFEERFKEAI 473
                 E+F E +
Sbjct: 101 LCDAVTEKFTEQL 113


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +3

Query: 294 LLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMN 413
           L K PK++ + +++P   E KFV+ ++        E+++N
Sbjct: 41  LTKIPKIISSSFELPSYFEKKFVMGLKKDELVENSESYIN 80


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 357 FVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEA 470
           + + + T  DY    +   A+ D+TS +S F++ F+ A
Sbjct: 361 YTILVNTLHDYIKVISIDEALLDITSSVSSFQDCFEIA 398


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,812
Number of Sequences: 5004
Number of extensions: 35418
Number of successful extensions: 83
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)