Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10466
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0515 - 3846405-3846449,3846804-3846899,3846980-3847058,384...    87   7e-18
12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925           60   1e-09
11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112           29   2.1  
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    29   2.7  
09_01_0054 + 878994-879023,879925-880162,880464-880486,880531-88...    28   4.8  

>07_01_0515 -
           3846405-3846449,3846804-3846899,3846980-3847058,
           3847144-3847233,3847529-3847626
          Length = 135

 Score = 87.4 bits (207), Expect = 7e-18
 Identities = 35/71 (49%), Positives = 53/71 (74%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
           +EDHT+GN++R QL +DP VLFAGYK+PHPL++K ++R+ T +  TP +A+  AI DL  
Sbjct: 52  REDHTIGNILRMQLHRDPNVLFAGYKLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDK 111

Query: 435 ELSLFEERFKE 467
           EL   ++ F++
Sbjct: 112 ELENLKQAFED 122


>12_01_0594 - 4859492-4859640,4860113-4860189,4861825-4861925
          Length = 108

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 26/58 (44%), Positives = 39/58 (67%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDL 428
           +EDHTL N +R  L +DP+V F GY IPHP ++K  +R+QTT D   ++   +++ DL
Sbjct: 18  EEDHTLANSVRFVLNQDPRVAFCGYSIPHPADNKVNIRVQTTGD-PAKDVLKDSLQDL 74


>11_01_0733 - 6068930-6068941,6069259-6069365,6069875-6070112
          Length = 118

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 333 IPHPLEHKFVLRIQTTSDYTPQEAFMNAITDL 428
           IPHP ++K  +R+QTT D    + F + + DL
Sbjct: 64  IPHPADNKVNIRVQTTGD-PAIDVFKDGLQDL 94


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 328 TRYHIHWNINLYSEFKQHQTIHH 396
           TR HI  N+NLYSE+    T++H
Sbjct: 359 TREHIPNNLNLYSEYPDDVTMNH 381


>09_01_0054 +
           878994-879023,879925-880162,880464-880486,880531-880587,
           880864-880882,881200-881266,881762-881771
          Length = 147

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 348 EHKFVLRIQTTSDYTPQEAFMNAITDLTSEL 440
           E  F+  ++TT   T  E  MNAIT L  +L
Sbjct: 44  EDSFIFTVETTGAITAYELIMNAITVLRQKL 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,371,207
Number of Sequences: 37544
Number of extensions: 190611
Number of successful extensions: 349
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)