Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10466
(587 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X98433-1|CAA67075.1| 117|Homo sapiens RNA polymerase II subunit... 140 3e-33
X82385-1|CAA57785.1| 117|Homo sapiens RNA polymerase II subunit... 140 3e-33
L37127-1|AAD05361.1| 117|Homo sapiens RNA polymerase II protein. 140 3e-33
BC141830-1|AAI41831.1| 117|Homo sapiens POLR2J protein protein. 140 3e-33
BC139902-1|AAI39903.1| 117|Homo sapiens polymerase (RNA) II (DN... 140 3e-33
BC065711-1|AAH65711.1| 117|Homo sapiens POLR2J protein protein. 140 3e-33
BC024165-1|AAH24165.1| 117|Homo sapiens polymerase (RNA) II (DN... 140 3e-33
AJ277932-1|CAC18368.1| 127|Homo sapiens RPB11a protein protein. 128 1e-29
AJ277931-1|CAC18332.1| 115|Homo sapiens RPB11b1alpha protein pr... 127 3e-29
AJ277741-1|CAC18331.1| 115|Homo sapiens RPB11b2alpha protein pr... 127 3e-29
AJ277739-1|CAC18329.1| 115|Homo sapiens RPB11b1alpha protein pr... 127 3e-29
AC004084-4|AAP22342.1| 115|Homo sapiens unknown protein. 127 3e-29
AF468111-1|AAL87672.1| 158|Homo sapiens DNA-directed RNA polyme... 126 4e-29
AB209398-1|BAD92635.1| 180|Homo sapiens MGC13098 protein varian... 124 2e-28
BC105584-1|AAI05585.1| 138|Homo sapiens POLR2J4 protein protein. 120 3e-27
BC017341-1|AAH17341.2| 160|Homo sapiens MGC13098 protein protein. 120 4e-27
BC017250-1|AAH17250.1| 179|Homo sapiens MGC13098 protein protein. 120 4e-27
BC062722-1|AAH62722.1| 130|Homo sapiens POLR2J4 protein protein. 118 2e-26
BC000889-1|AAH00889.1| 133|Homo sapiens polymerase (RNA) I poly... 66 9e-11
AL136439-1|CAI16933.1| 133|Homo sapiens polymerase (RNA) I poly... 66 9e-11
BC086857-1|AAH86857.1| 116|Homo sapiens DNA directed RNA polyme... 52 2e-06
AJ277740-1|CAC18330.1| 116|Homo sapiens RPB11b1beta protein pro... 52 2e-06
AC004084-3|AAP22341.1| 76|Homo sapiens unknown protein. 51 3e-06
>X98433-1|CAA67075.1| 117|Homo sapiens RNA polymerase II subunit
protein.
Length = 117
Score = 140 bits (339), Expect = 3e-33
Identities = 61/81 (75%), Positives = 74/81 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVAIKDKQEGIE 117
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>X82385-1|CAA57785.1| 117|Homo sapiens RNA polymerase II subunit
protein.
Length = 117
Score = 140 bits (339), Expect = 3e-33
Identities = 61/81 (75%), Positives = 74/81 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVAIKDKQEGIE 117
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>L37127-1|AAD05361.1| 117|Homo sapiens RNA polymerase II protein.
Length = 117
Score = 140 bits (339), Expect = 3e-33
Identities = 61/81 (75%), Positives = 74/81 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVAIKDKQEGIE 117
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>BC141830-1|AAI41831.1| 117|Homo sapiens POLR2J protein protein.
Length = 117
Score = 140 bits (339), Expect = 3e-33
Identities = 61/81 (75%), Positives = 74/81 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVAIKDKQEGIE 117
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>BC139902-1|AAI39903.1| 117|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide J, 13.3kDa protein.
Length = 117
Score = 140 bits (339), Expect = 3e-33
Identities = 61/81 (75%), Positives = 74/81 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVAIKDKQEGIE 117
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>BC065711-1|AAH65711.1| 117|Homo sapiens POLR2J protein protein.
Length = 117
Score = 140 bits (339), Expect = 3e-33
Identities = 61/81 (75%), Positives = 74/81 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVAIKDKQEGIE 117
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>BC024165-1|AAH24165.1| 117|Homo sapiens polymerase (RNA) II (DNA
directed) polypeptide J, 13.3kDa protein.
Length = 117
Score = 140 bits (339), Expect = 3e-33
Identities = 61/81 (75%), Positives = 74/81 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFKEAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVAIKDKQEGIE 117
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>AJ277932-1|CAC18368.1| 127|Homo sapiens RPB11a protein protein.
Length = 127
Score = 128 bits (310), Expect = 1e-29
Identities = 61/91 (67%), Positives = 74/91 (81%), Gaps = 10/91 (10%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 37 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 96
Query: 435 ELSLFEERFK----------EAIKEKKEGLD 497
ELSL EERF+ AIK+K+EG++
Sbjct: 97 ELSLLEERFRVRAGPGGADGVAIKDKQEGIE 127
Score = 58.0 bits (134), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 37
>AJ277931-1|CAC18332.1| 115|Homo sapiens RPB11b1alpha protein
protein.
Length = 115
Score = 127 bits (306), Expect = 3e-29
Identities = 55/73 (75%), Positives = 65/73 (89%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 36 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 95
Query: 435 ELSLFEERFKEAI 473
ELSL EERF+ +
Sbjct: 96 ELSLLEERFRTCL 108
Score = 51.6 bits (118), Expect = 2e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTINK 36
>AJ277741-1|CAC18331.1| 115|Homo sapiens RPB11b2alpha protein
protein.
Length = 115
Score = 127 bits (306), Expect = 3e-29
Identities = 55/73 (75%), Positives = 65/73 (89%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 36 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 95
Query: 435 ELSLFEERFKEAI 473
ELSL EERF+ +
Sbjct: 96 ELSLLEERFRTCL 108
Score = 50.8 bits (116), Expect = 3e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTMNK 36
>AJ277739-1|CAC18329.1| 115|Homo sapiens RPB11b1alpha protein
protein.
Length = 115
Score = 127 bits (306), Expect = 3e-29
Identities = 55/73 (75%), Positives = 65/73 (89%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 36 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 95
Query: 435 ELSLFEERFKEAI 473
ELSL EERF+ +
Sbjct: 96 ELSLLEERFRTCL 108
Score = 51.6 bits (118), Expect = 2e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTINK 36
>AC004084-4|AAP22342.1| 115|Homo sapiens unknown protein.
Length = 115
Score = 127 bits (306), Expect = 3e-29
Identities = 55/73 (75%), Positives = 65/73 (89%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 36 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 95
Query: 435 ELSLFEERFKEAI 473
ELSL EERF+ +
Sbjct: 96 ELSLLEERFRTCL 108
Score = 50.8 bits (116), Expect = 3e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTMNK 36
>AF468111-1|AAL87672.1| 158|Homo sapiens DNA-directed RNA
polymerase II subunit 11 protein.
Length = 158
Score = 126 bits (305), Expect = 4e-29
Identities = 55/70 (78%), Positives = 64/70 (91%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL S
Sbjct: 36 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIS 95
Query: 435 ELSLFEERFK 464
ELSL EERF+
Sbjct: 96 ELSLLEERFR 105
Score = 50.8 bits (116), Expect = 3e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTMNK 36
>AB209398-1|BAD92635.1| 180|Homo sapiens MGC13098 protein variant
protein.
Length = 180
Score = 124 bits (300), Expect = 2e-28
Identities = 54/70 (77%), Positives = 63/70 (90%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
KEDHTLGN+I+ QLLKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL
Sbjct: 58 KEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIR 117
Query: 435 ELSLFEERFK 464
ELSL EERF+
Sbjct: 118 ELSLLEERFR 127
Score = 51.6 bits (118), Expect = 2e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 23 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTINK 58
>BC105584-1|AAI05585.1| 138|Homo sapiens POLR2J4 protein protein.
Length = 138
Score = 120 bits (290), Expect = 3e-27
Identities = 54/74 (72%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 KEDHTLGNMIRHQL-LKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLT 431
KEDHTLGN+I+ Q LKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL
Sbjct: 58 KEDHTLGNIIKSQCDLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLI 117
Query: 432 SELSLFEERFKEAI 473
SELSL EERF+ +
Sbjct: 118 SELSLLEERFRTCL 131
Score = 56.4 bits (130), Expect = 7e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
+NAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 22 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 58
>BC017341-1|AAH17341.2| 160|Homo sapiens MGC13098 protein protein.
Length = 160
Score = 120 bits (289), Expect = 4e-27
Identities = 54/71 (76%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 KEDHTLGNMIRHQL-LKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLT 431
KEDHTLGN+I+ Q LKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL
Sbjct: 52 KEDHTLGNIIKSQCDLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLI 111
Query: 432 SELSLFEERFK 464
SELSL EERF+
Sbjct: 112 SELSLLEERFR 122
Score = 56.4 bits (130), Expect = 7e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
+NAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 16 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 52
>BC017250-1|AAH17250.1| 179|Homo sapiens MGC13098 protein protein.
Length = 179
Score = 120 bits (289), Expect = 4e-27
Identities = 54/71 (76%), Positives = 63/71 (88%), Gaps = 1/71 (1%)
Frame = +3
Query: 255 KEDHTLGNMIRHQL-LKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLT 431
KEDHTLGN+I+ Q LKDP+VLFAGYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL
Sbjct: 56 KEDHTLGNIIKSQCDLKDPQVLFAGYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLI 115
Query: 432 SELSLFEERFK 464
SELSL EERF+
Sbjct: 116 SELSLLEERFR 126
Score = 56.4 bits (130), Expect = 7e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
+NAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 20 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 56
>BC062722-1|AAH62722.1| 130|Homo sapiens POLR2J4 protein protein.
Length = 130
Score = 118 bits (284), Expect = 2e-26
Identities = 53/74 (71%), Positives = 63/74 (85%), Gaps = 1/74 (1%)
Frame = +3
Query: 255 KEDHTLGNMIRHQL-LKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLT 431
KEDHTLGN+I+ Q LKDP+VLFA YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL
Sbjct: 50 KEDHTLGNIIKSQCDLKDPQVLFASYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLI 109
Query: 432 SELSLFEERFKEAI 473
SELSL EERF+ +
Sbjct: 110 SELSLLEERFRTCL 123
Score = 56.4 bits (130), Expect = 7e-08
Identities = 23/37 (62%), Positives = 30/37 (81%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
+NAPP FESFLL++GEKK+ +DTKV NA +FT+ K
Sbjct: 14 VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINK 50
>BC000889-1|AAH00889.1| 133|Homo sapiens polymerase (RNA) I
polypeptide D, 16kDa protein.
Length = 133
Score = 66.1 bits (154), Expect = 9e-11
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTLGN +R+ ++K+P+V F GY HP E K LRIQT E F + +L +
Sbjct: 46 EEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMN 105
Query: 435 ELSLFEERFKEAIKEKKE 488
++F+ +IK+ K+
Sbjct: 106 VCQHVLDKFEASIKDYKD 123
>AL136439-1|CAI16933.1| 133|Homo sapiens polymerase (RNA) I
polypeptide D, 16kDa protein.
Length = 133
Score = 66.1 bits (154), Expect = 9e-11
Identities = 30/78 (38%), Positives = 46/78 (58%)
Frame = +3
Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
+EDHTLGN +R+ ++K+P+V F GY HP E K LRIQT E F + +L +
Sbjct: 46 EEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLNELMN 105
Query: 435 ELSLFEERFKEAIKEKKE 488
++F+ +IK+ K+
Sbjct: 106 VCQHVLDKFEASIKDYKD 123
>BC086857-1|AAH86857.1| 116|Homo sapiens DNA directed RNA
polymerase II polypeptide J-related protein.
Length = 116
Score = 51.6 bits (118), Expect = 2e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTINK 36
>AJ277740-1|CAC18330.1| 116|Homo sapiens RPB11b1beta protein
protein.
Length = 116
Score = 51.6 bits (118), Expect = 2e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTINK 36
>AC004084-3|AAP22341.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 50.8 bits (116), Expect = 3e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +1
Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
MNAPP FESFLL++GE K+ +DTKV NA +FT+ K
Sbjct: 1 MNAPPAFESFLLFEGE-KITINKDTKVPNACLFTMNK 36
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,836,832
Number of Sequences: 237096
Number of extensions: 1169551
Number of successful extensions: 1993
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1980
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6155099854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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