Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10466
         (587 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa...    86   2e-17
At2g29540.1 68415.m03588 DNA-directed RNA polymerase I(A) and II...    57   8e-09
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    29   3.0  
At3g26090.1 68416.m03249 expressed protein                             28   5.3  
At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    27   9.3  
At1g51000.1 68414.m05733 expressed protein ; expression supporte...    27   9.3  

>At3g52090.1 68416.m05716 DNA-directed RNA polymerase II 13.6 kDa
           subunit (RPB13.6) identical to SP|Q38859 DNA-directed
           RNA polymerase II 13.6 kDa polypeptide (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 116

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 35/73 (47%), Positives = 53/73 (72%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
           +EDHT+GN++R QL +D  VLFAGY++PHPL++K ++RI TTS  +P +A+  AI DL  
Sbjct: 37  REDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDK 96

Query: 435 ELSLFEERFKEAI 473
           EL   + +F+  +
Sbjct: 97  ELDYLKNQFEAEV 109



 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 19/37 (51%), Positives = 27/37 (72%)
 Frame = +1

Query: 148 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVKK 258
           MNAP  +E F++ +G KKV  + DTK+ NAA FTV++
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVER 37


>At2g29540.1 68415.m03588 DNA-directed RNA polymerase I(A) and
           III(C) 14 kDa subunit (RPAC14) identical to RNA
           polymerase I(A) and III(C) 14 kDa subunit (AtRPAC14)
           [Arabidopsis thaliana] GI:1184686
          Length = 122

 Score = 57.2 bits (132), Expect = 8e-09
 Identities = 30/78 (38%), Positives = 43/78 (55%)
 Frame = +3

Query: 255 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 434
           +EDHTL N +R  L +DP+V  A Y IPHP   +  +R+QTT D   +E F +A  +L  
Sbjct: 18  EEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTGD-PAREVFKDACQELMQ 76

Query: 435 ELSLFEERFKEAIKEKKE 488
                   F +A+ E K+
Sbjct: 77  MNRHVRSVFDKAVAEYKD 94


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -1

Query: 431 C*VCNGIHE---RFLWCIV*CCLNSEYKFMFQWMWYLVTGKEDFWV 303
           C +C G  +   RF  C   CCL    K +  W  Y+  G   F++
Sbjct: 608 CEICEGTIDPTKRFYVCDEYCCLTLHIKCLLGWDLYMKHGSSSFYL 653


>At3g26090.1 68416.m03249 expressed protein
          Length = 459

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 309 KVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDL 428
           K + AG ++   L HK    I TT D T  + F NA+ ++
Sbjct: 352 KFIVAGAEMELNLSHKTRQEILTTQDLTHTDLFKNALNEV 391


>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 342 PLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEE 455
           P E KF+ + +   D   +  F+  + D+TS+L L  +
Sbjct: 499 PSEQKFLWKPEEIYDVLARNIFLKHVVDITSKLQLISD 536


>At1g51000.1 68414.m05733 expressed protein ; expression supported
           by MPSS
          Length = 74

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 417 ITDLTSELSLFEERFKEAIKEKKE 488
           IT +T++L    E  KE +KEKKE
Sbjct: 46  ITGMTTKLDELLEMMKETVKEKKE 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,829,165
Number of Sequences: 28952
Number of extensions: 173743
Number of successful extensions: 400
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1161268208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)