Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10465
(815 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 122 6e-29
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 30 0.45
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 29 0.60
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 29 0.79
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|... 28 1.4
SPAC823.13c |||mitochondrial inner membrane protein|Schizosaccha... 27 2.4
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch... 27 2.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.4
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 3.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 26 5.6
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 26 5.6
SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|ch... 26 5.6
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 7.4
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 7.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 7.4
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 25 9.7
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 9.7
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 9.7
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 9.7
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 122 bits (294), Expect = 6e-29
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = +2
Query: 257 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 436
++ N + APARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++
Sbjct: 100 IIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLV 159
Query: 437 KPGDKVGASEATLLNMLNISPFSY 508
KVG SEATLLNMLNISPF+Y
Sbjct: 160 SKDAKVGPSEATLLNMLNISPFTY 183
Score = 94.7 bits (225), Expect = 1e-20
Identities = 42/81 (51%), Positives = 61/81 (75%)
Frame = +3
Query: 12 LLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKLL 191
L ++Y F+V DNV SQQM +R LRG++ ++MGKNTM+R+A++ +++ P LE+LL
Sbjct: 18 LFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELERLL 77
Query: 192 PHIKGNVGFVFTRGDLVEVRD 254
P ++GNVGFVFT DL EVR+
Sbjct: 78 PVVRGNVGFVFTNADLKEVRE 98
Score = 64.1 bits (149), Expect = 2e-11
Identities = 27/61 (44%), Positives = 38/61 (62%)
Frame = +1
Query: 517 VKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNL 696
V +YD G +F+PEILD+ EDL + + + A+SL YPTI S HS+ N +KNL
Sbjct: 187 VLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNL 246
Query: 697 L 699
+
Sbjct: 247 V 247
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.9 bits (64), Expect = 0.45
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -3
Query: 762 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 583
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 582 ILWFDVQNF 556
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 29.5 bits (63), Expect = 0.60
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 154 TTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTTVGEQSPGSSSS 291
+T IQPS + + +A PA T++ S+T E++P SSS
Sbjct: 532 STQQEIQPSSSVPEAASNEIAEKEPAVTAIESITERKEEAPVISSS 577
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 29.1 bits (62), Expect = 0.79
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 112 CSWEKTL*CAKPSKTTWTTIQPSRNCCHTSRATLAS 219
CS EKT C++ K+ T+ +PS CC ++T+ +
Sbjct: 264 CSTEKTSCCSQEKKSCCTSEKPS--CCSNGKSTVCA 297
>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 530
Score = 28.3 bits (60), Expect = 1.4
Identities = 29/96 (30%), Positives = 47/96 (48%)
Frame = +1
Query: 4 SSNSWTSTQNVSSWVPITWARNRCSRSVSRYVAPVSCSWEKTL*CAKPSKTTWTTIQPSR 183
SS S +ST+ SS+ A + + S S YVAPVS S + + S T++ P+
Sbjct: 170 SSYSASSTEVTSSYP----ASSEVATSTSSYVAPVSSSVASSSEISAGSATSYV---PTS 222
Query: 184 NCCHTSRATLASCSPAETSLRSVTTVGEQSPGSSSS 291
+ + +AS S + + + V+T S +SSS
Sbjct: 223 SSSIALSSVVASASVSAAN-KGVSTPAVSSAAASSS 257
>SPAC823.13c |||mitochondrial inner membrane
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 178 RAGLLSRWSLMALRIIVFFPMSTILEPR 95
+A W LM + +++F + ILEPR
Sbjct: 162 QASTWGTWGLMGINVVLFVVVQLILEPR 189
>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/73 (27%), Positives = 33/73 (45%)
Frame = -3
Query: 567 VQNFRCKNSSRIIYLLNNKTYENGEMFNMLRRVASEAPTLSPGFKMCTSLMISIVPFEIL 388
V++ R ++RII + + TY N F L V + + PG T L I+ +
Sbjct: 380 VEDIRNSTATRIIEMTSKSTYMNIADFEWLLTVYVDLANI-PGIDTGTLLNNQIIDLCVR 438
Query: 387 VGMERAWKKEVFS 349
V R + ++FS
Sbjct: 439 VKALRPFSVDIFS 451
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -2
Query: 256 LSRTSTRSPRVNTKPTLPLMCGNSFSRAGLLSRWSLMALRII 131
L +T +S + PTLP + + S +G+LSR + + ++ I
Sbjct: 35 LKQTVLQSSSFKSFPTLPRLAARNISNSGILSRTTPVIIKQI 76
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.1 bits (57), Expect = 3.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 417 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 292
+IS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.2 bits (55), Expect = 5.6
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = -3
Query: 753 LLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTEI 580
L D G + +C+ +D ++++T + +++S KS + N EL TE+
Sbjct: 1020 LADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYKELATEL 1077
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 26.2 bits (55), Expect = 5.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 145 PSKTTWTTIQPSRNCCHTSRATLASCSPAETSLRSVTTV 261
PS + W T+ SR SR +S SP+ S + T+
Sbjct: 187 PSNSYWKTVIGSREMFEDSRKKTSSPSPSFASSKDAGTI 225
>SPBC21D10.10 |||bromodomain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.2 bits (55), Expect = 5.6
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = +3
Query: 240 VEVRDNCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLL 410
VE + R++ + + P + + PTT +R LS++ SL KFQ +L
Sbjct: 140 VEAANKSLRSRKKTPEIAAPA-NIEPEVAPTTKTPKKRAALSNEEKQSLKKFQSAML 195
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 7.4
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
Frame = +2
Query: 158 PGQQSSPRETVATHQGQRWLR--VHXXXXXXXXXQLLENKVQAPARPGAIAPLSVVIPAH 331
P QQSS + HQ ++ + ++ E V A+P + LS
Sbjct: 793 PSQQSSESKQSTQHQQPVEVQKSIQSDVSAPKAKEVSEKPVSHQAKPSNASQLS-----R 847
Query: 332 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGAS 463
NT K + +A SIP S + ++ ND H+ DK S
Sbjct: 848 NTDDTQAKEAPKEA-SIPDNASTASTKVSNDSHLKPDADKKSVS 890
>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 7.4
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +3
Query: 255 NCWRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKS 416
+ +R++ R L+ P +S PP TPA+ + + ++P+ R++L++
Sbjct: 79 SAFRSRYRGSLLNRNSPSLRSLSPPATPATPRSRIEGESQTSAIPQTDRLILEN 132
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 324 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 422
PPTT + + +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 213 GFVFTRGDLVEVRDNCWRTKSRLQLVPVPL 302
GFV T +++ ++ CW ++ QLV PL
Sbjct: 548 GFVATFSEML-IQTQCWHLSAQTQLVSNPL 576
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 30 KCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA 176
K IVGA NVGS + +S + IV++ N +KA + +D N A
Sbjct: 22 KIVIVGAGNVGSTTAFTLLLSGLAAEIVIIDLN--KKKAEGEAMDLNHA 68
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 300 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 413
L HC + P A Q KPL S+ + SL KF+ LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 424 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 302
IVD NS + R + L ++G L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,624,731
Number of Sequences: 5004
Number of extensions: 79183
Number of successful extensions: 252
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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