Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10465
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        132   4e-31
SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.069
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        32   0.48 
SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  30   2.6  
SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)                30   2.6  
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_7319| Best HMM Match : SRCR (HMM E-Value=0)                         30   2.6  
SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   4.5  
SB_3651| Best HMM Match : NACHT (HMM E-Value=2.6)                      29   4.5  
SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)          28   7.9  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  132 bits (318), Expect = 4e-31
 Identities = 61/81 (75%), Positives = 69/81 (85%)
 Frame = +3

Query: 9   QLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALEKL 188
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HL+NNP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 189 LPHIKGNVGFVFTRGDLVEVR 251
           LPHIKGN+GFVFT+ DL +VR
Sbjct: 61  LPHIKGNIGFVFTKEDLADVR 81



 Score =  105 bits (253), Expect = 3e-23
 Identities = 47/68 (69%), Positives = 59/68 (86%)
 Frame = +2

Query: 257 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 436
           ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++
Sbjct: 84  IMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLI 143

Query: 437 KPGDKVGA 460
           K  +K+ A
Sbjct: 144 KKDEKLKA 151


>SB_36524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = +3

Query: 123 KNTMMRKAIKDHLDNNPALEKLLPHIKGNVGFVFTRGDL 239
           K T++RK +K HLDN P L K LP + G +  + + GDL
Sbjct: 168 KVTIVRKELKSHLDNLPDLSK-LPDVDGGLAPLPSAGDL 205


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.48
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -2

Query: 424 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 302
           I+D  NS   +  R  K+LEERG L+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_14239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 706

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 10  NSWTSTQNVSSWVPITWARNRCSRSVSRYVA 102
           NSW++T  +  ++ I W RN C  + +  VA
Sbjct: 418 NSWSTTWGMDGYIKIAWKRNTCGVTRNPVVA 448


>SB_48995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 216

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 246 VRDNCWRTKSRLQLVPVPLPHCQSSFPPT--TPASVQRKPLSSKLFPS 383
           V D  +RT+SR+ L    LP+   + PP+  TP  +   PLS    PS
Sbjct: 63  VLDEPYRTRSRILLPITDLPYLGLNEPPSIATPCLIPNYPLSRLFSPS 110


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 456  PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 340
            P   P F+ C +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_42749| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
          Length = 401

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 190 CHTSRAT--LASCSPAETSLRSVTTVGEQSPGSSSSRCHCPIV 312
           C+  +A    +SC P+    + V TVG+ S   SS+   CP++
Sbjct: 262 CNNCKAPNHFSSCCPSLGGKKQVHTVGDGSDSDSSAEMVCPVI 304


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
 Frame = +2

Query: 263  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIINDVHIL 436
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++    D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 437  KPGDK 451
             PG K
Sbjct: 2129 TPGKK 2133


>SB_7319| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 957

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
 Frame = +1

Query: 22  STQNVSSWVPITWARNRCSRSVSRYV----APVSCSWEKTL*CAKPSKTTWTTIQPSRNC 189
           ST    +W P++ +     R +  Y+    AP  CS       A  +  T TT  PS NC
Sbjct: 512 STSLFVAWDPLS-SEQILGRLLGYYIWYSPAPGPCSLLNNCSSANSTSCTNTTAAPSSNC 570

Query: 190 CHTSRATLASCSPA----ETSLRSVTTVGEQSPGSSSSRC 297
              + AT ++ + A    + SL +  T    +  + +S C
Sbjct: 571 SLATNATASANTTAAQNSDCSLSTNATASANTTAAPNSNC 610


>SB_25472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1191

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = -1

Query: 659 EAIVGYPIAKERAATLATPAWNLARRSSGLMSRISGAKIVPESYTCLTTRHMRME 495
           E I+ Y    E++  L    ++    S   + +I   K +P+S+  +T+R  RM+
Sbjct: 420 ERIIEYICNNEKSVALVIDGYDELNTSEKALHKILCKKALPQSFILMTSRRNRMQ 474


>SB_32924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
 Frame = +3

Query: 198 IKGNVGFVFTRGDLVEVRDNC---WRTKSRLQLVPVPLPHCQSSFPPTTPASVQR 353
           I  +V FV       E+RD C   WR   R++   VP+P   SS P   P    R
Sbjct: 276 INPSVHFVLNLEFRQELRDMCLTGWRALRRMKKTVVPMPLSSSSQPRILPRLTAR 330


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 23   VPKMFHRGCR*RGLATDAADPYLAT-WLQYRAHGKKHYDA 139
            VPKMFH     RG+ T+A  P + T +L+ R  G++  +A
Sbjct: 3856 VPKMFHGNRDNRGIKTNAIFPTIITRYLRIRPMGRRGLNA 3895


>SB_3651| Best HMM Match : NACHT (HMM E-Value=2.6)
          Length = 105

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = -1

Query: 659 EAIVGYPIAKERAATLATPAWNLARRSSGLMSRISGAKIVPESYTCLTTRHMRME 495
           E I+ Y    E+   L    ++    S   + +I   K +P+S+  +T+R  RM+
Sbjct: 49  ERIIEYMCINEKRVALVIDGYDELNTSEKALHKILCKKALPQSFILMTSRRNRMQ 103


>SB_58702| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.059)
          Length = 765

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +3

Query: 261 WRTKSRLQLVPVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSS 419
           WR K    L  + L    SS P +TPAS+     ++ L PSL   Q   +  S
Sbjct: 574 WRQKLERPLTTLKLNQPDSS-PASTPASIPESANNTPLHPSLSSKQETNVPKS 625


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,841,866
Number of Sequences: 59808
Number of extensions: 638290
Number of successful extensions: 1983
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1976
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)