Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10465
         (815 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   134   5e-32
U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z79758-4|CAB02133.2|  790|Caenorhabditis elegans Hypothetical pr...    29   4.0  
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    29   5.3  
AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical ...    28   7.0  
AF039046-14|AAB94214.1|  388|Caenorhabditis elegans Prion-like-(...    28   9.2  
AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    28   9.2  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  134 bits (325), Expect = 5e-32
 Identities = 61/89 (68%), Positives = 76/89 (85%)
 Frame = +2

Query: 254 QLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHI 433
           +LLEN+  APA+ GAIAP  V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH+
Sbjct: 101 KLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHL 160

Query: 434 LKPGDKVGASEATLLNMLNISPFSYVLLL 520
           +K GDKVGASE+ LLNML ++PFSY L++
Sbjct: 161 IKEGDKVGASESALLNMLGVTPFSYGLVV 189



 Score =  125 bits (302), Expect = 3e-29
 Identities = 56/109 (51%), Positives = 75/109 (68%)
 Frame = +3

Query: 3   IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPALE 182
           +++L +EYPKC +VG DNVGS+QMQ+IR ++RG + +LMGKNTM+RKA++ HL  NP+LE
Sbjct: 17  LVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGKNPSLE 76

Query: 183 KLLPHIKGNVGFVFTRGDLVEVRDNCWRTKSRLQLVPVPLPHCQSSFPP 329
           KLLPHI  NVGFVFT+ DL E+R      +         +  C    PP
Sbjct: 77  KLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPP 125



 Score = 88.2 bits (209), Expect = 6e-18
 Identities = 37/63 (58%), Positives = 52/63 (82%)
 Frame = +1

Query: 511 LVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 690
           LVV+QVYD GT++ PE+LD+  E+LR +F +GV NVA++SLA+ YPT+AS  HS+ANG +
Sbjct: 187 LVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQ 246

Query: 691 NLL 699
           N+L
Sbjct: 247 NML 249


>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +3

Query: 15  LDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDNNPA--LEKL 188
           +D+Y   FI    N+ S +   IR   + +S    GKN ++  A+     +  A  L K 
Sbjct: 34  VDQYKNLFIFTIANMRSTRFIAIRQKYKENSRFFFGKNNVISIALGKQKSDEYANQLHKA 93

Query: 189 LPHIKGNVGFVFTRGDLVEV 248
              +KG  G +FT     EV
Sbjct: 94  SAILKGQCGLMFTNMSKKEV 113


>Z79758-4|CAB02133.2|  790|Caenorhabditis elegans Hypothetical
           protein W10D5.3c protein.
          Length = 790

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
 Frame = +2

Query: 128 HYDAQSHQRPPGQQSSPRETVATHQGQRWLRVHXXXXXXXXXQLLENKVQAPARPGAIAP 307
           HY  Q  Q+P       ++ +A+H      + H         +LLE +++   R GA A 
Sbjct: 126 HYQQQQQQQPQPHNLLHQQMMASHHSHLQQQHHPSTVRWLTPELLEEQLRGSMRYGAPAA 185

Query: 308 LSVV-IPAHNT 337
            +    P H++
Sbjct: 186 AAATNAPLHSS 196


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = -3

Query: 792 RQQLQRTSMGLNELLDGGSFFKLNLCDSSDGQK-VLETIGDGMRG*SNSWVSNSQRKSSY 616
           R+ L+    G+ +  +GG   ++ + DS D  K +LE+  +G+ G +N  +   QR  + 
Sbjct: 180 RRPLKMDKNGIIDSWNGGDTKEI-MDDSDDEVKRILESGEEGLVGKNNRTLKTQQRNHTE 238

Query: 615 ISNSSLELGTEILWFDVQNFR 553
           ++    E+  E L F    F+
Sbjct: 239 VTLEEEEINLEDLQFKSYQFK 259


>AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical
           protein C32F10.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +3

Query: 294 VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSSTMYTS 434
           VP P   S  PP    +    P+SS+  P +P K Q V  +SST   S
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESSTTSAS 254


>AF039046-14|AAB94214.1|  388|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 54
           protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 172 QPSRNCCHTSRATLASCSPAETSLRSVTTVGEQSPGSSSSRCHC 303
           QP+  C     A   SCS +  + +  TT  +QSP S  + C C
Sbjct: 332 QPAAQC---QSACQDSCSSSCQAAQPATTACQQSPQSPQNSCSC 372


>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = +2

Query: 257 LLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGT 406
           +L   +Q  A   A+  L+  +P   TGL P +   FQAL  P  I+  T
Sbjct: 42  VLNRYMQLEAYCDAVDDLTGALP--KTGLAPNEPDLFQALFFPRSIAPRT 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,255,717
Number of Sequences: 27780
Number of extensions: 463292
Number of successful extensions: 1678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)