Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10465
(815 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 109 2e-24
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 109 2e-24
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 109 2e-24
At1g25260.1 68414.m03134 acidic ribosomal protein P0-related con... 35 0.074
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 30 2.1
At1g33410.1 68414.m04136 expressed protein 29 2.8
At5g04470.1 68418.m00445 expressed protein 29 3.7
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put... 29 3.7
At3g56700.1 68416.m06307 male sterility protein, putative simila... 29 4.9
At1g69670.1 68414.m08018 cullin, putative contains similarity to... 29 4.9
At1g68400.1 68414.m07814 leucine-rich repeat transmembrane prote... 29 4.9
At1g26830.1 68414.m03270 cullin, putative similar to Cullin homo... 29 4.9
At5g13260.1 68418.m01523 expressed protein 28 6.4
At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger) fa... 28 8.5
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 28 8.5
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 28 8.5
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 109 bits (262), Expect = 2e-24
Identities = 52/89 (58%), Positives = 67/89 (75%)
Frame = +2
Query: 254 QLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHI 433
++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V +
Sbjct: 103 EVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVEL 162
Query: 434 LKPGDKVGASEATLLNMLNISPFSYVLLL 520
+K GDKVG+SEA LL L I PFSY L++
Sbjct: 163 IKQGDKVGSSEAALLAKLGIRPFSYGLVV 191
Score = 102 bits (244), Expect = 3e-22
Identities = 48/92 (52%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPA 176
+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A
Sbjct: 17 LCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTA 76
Query: 177 LEKLLPHIKGNVGFVFTRGDLVEVRDNCWRTK 272
+ LLP ++GNVG +FT+GDL EV + + K
Sbjct: 77 ILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYK 108
Score = 79.8 bits (188), Expect = 2e-15
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 511 LVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 690
LVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH N +K
Sbjct: 189 LVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYK 248
Query: 691 NLLXXXXXXXXXXXXXXXXKEFIK 762
N L KEF+K
Sbjct: 249 NALAIAVATDYTFPQAEKVKEFLK 272
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 109 bits (262), Expect = 2e-24
Identities = 52/89 (58%), Positives = 67/89 (75%)
Frame = +2
Query: 254 QLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHI 433
++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V +
Sbjct: 103 EVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVEL 162
Query: 434 LKPGDKVGASEATLLNMLNISPFSYVLLL 520
+K GDKVG+SEA LL L I PFSY L++
Sbjct: 163 IKQGDKVGSSEAALLAKLGIRPFSYGLVV 191
Score = 102 bits (244), Expect = 3e-22
Identities = 48/92 (52%), Positives = 67/92 (72%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLDN--NPA 176
+ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H +N N A
Sbjct: 17 LCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTA 76
Query: 177 LEKLLPHIKGNVGFVFTRGDLVEVRDNCWRTK 272
+ LLP ++GNVG +FT+GDL EV + + K
Sbjct: 77 ILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYK 108
Score = 78.6 bits (185), Expect = 5e-15
Identities = 34/84 (40%), Positives = 53/84 (63%)
Frame = +1
Query: 511 LVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 690
LVV+ VYD+G++F+PE+LD+ + L KF +G++ V +L+LA+ YPT+A+APH N +K
Sbjct: 189 LVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYK 248
Query: 691 NLLXXXXXXXXXXXXXXXXKEFIK 762
N L KE++K
Sbjct: 249 NALAIAVATEYTFPQAEKVKEYLK 272
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 109 bits (262), Expect = 2e-24
Identities = 52/89 (58%), Positives = 67/89 (75%)
Frame = +2
Query: 254 QLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHI 433
++ + KV APAR G +AP+ VV+ NTGL P +TSFFQ L+IPTKI+KGT+EII V +
Sbjct: 104 EVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVEL 163
Query: 434 LKPGDKVGASEATLLNMLNISPFSYVLLL 520
+K GDKVG+SEA LL L I PFSY L++
Sbjct: 164 IKKGDKVGSSEAALLAKLGIRPFSYGLVV 192
Score = 99 bits (238), Expect = 2e-21
Identities = 48/92 (52%), Positives = 65/92 (70%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 IIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGSSIVLMGKNTMMRKAIKDHLD--NNPA 176
+ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKNTMM+++++ H D N A
Sbjct: 18 LCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQA 77
Query: 177 LEKLLPHIKGNVGFVFTRGDLVEVRDNCWRTK 272
LLP ++GNVG +FT+GDL EV + + K
Sbjct: 78 FLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYK 109
Score = 84.2 bits (199), Expect = 9e-17
Identities = 39/84 (46%), Positives = 54/84 (64%)
Frame = +1
Query: 511 LVVKQVYDSGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 690
LVV+ VYD+G++F PE+L++ +DL KF AGV+ + ALSLAI YPT+A+APH N +K
Sbjct: 190 LVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYK 249
Query: 691 NLLXXXXXXXXXXXXXXXXKEFIK 762
N+L KEF+K
Sbjct: 250 NVLAVALATEYSFPQAENVKEFLK 273
>At1g25260.1 68414.m03134 acidic ribosomal protein P0-related
contains similarity to 60S acidic ribosomal protein
GI:5815233 from [Homo sapiens]
Length = 235
Score = 34.7 bits (76), Expect = 0.074
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +2
Query: 350 EKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGASEATLLNMLNISPFSYVL-LLSR 526
E + L +P +++KGT+E++ D + + G ++ A +L +L + ++ L LL R
Sbjct: 149 EMEPLLRKLEMPVRLNKGTVELVADFVVCEEGKQLSPKSAHILRLLRMKMATFKLNLLCR 208
Query: 527 Y 529
+
Sbjct: 209 W 209
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 29.9 bits (64), Expect = 2.1
Identities = 21/61 (34%), Positives = 24/61 (39%)
Frame = +3
Query: 291 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SPVTRLELLKP 470
P PL SS PP P+S LS L PS P S++ S P L P
Sbjct: 58 PPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSPSSAPPSSLSPSSPPPLSLSPSSP 117
Query: 471 P 473
P
Sbjct: 118 P 118
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +1
Query: 64 RNRCSRSVSRYVAPVSCSW--EKTL*CAKPSKTTWTTIQPSRNCC 192
RN S +V R + V S EKT C++ + W +Q R CC
Sbjct: 823 RNGQSDAVERILVVVEASLRGEKTFGCSQDTSGDWCLLQHLRGCC 867
>At5g04470.1 68418.m00445 expressed protein
Length = 127
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 297 PLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 413
P P Q PP+TP+S+ + KL SL K++ ++ K
Sbjct: 51 PPPPPQKPRPPSTPSSLGIRSCKRKLMTSLSKYEIIVNK 89
>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 890
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = +3
Query: 165 NNPALEKLL--PHIKGNVGFVFTRGDLVEVRD 254
N P ++K PHI VGF+ T+GD+ + D
Sbjct: 781 NQPVIDKTRERPHINDWVGFMLTKGDIKSIVD 812
>At3g56700.1 68416.m06307 male sterility protein, putative similar
to SP|Q08891 Male sterility protein 2 {Arabidopsis
thaliana}; contains Pfam profile PF03015: Male sterility
protein
Length = 527
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 175 PSRNCCHTSRATLASCSPAETSLRSVTTVGEQSPGSSSSR 294
P R HT+R SC ETS +VT++ +P + +SR
Sbjct: 33 PRRRLSHTTRRVQTSCFYGETSFEAVTSL--VTPKTETSR 70
>At1g69670.1 68414.m08018 cullin, putative contains similarity to
Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from
[Homo sapiens]; contains Pfam profile PF00888: Cullin
family
Length = 732
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = -3
Query: 549 KNSSRIIYLLNNKTYENGEMFNMLRRVASEAPTL 448
+NS + LLN+K + G M+++ RRVA+ T+
Sbjct: 271 ENSGLVNMLLNDKYEDMGRMYSLFRRVANGLVTV 304
>At1g68400.1 68414.m07814 leucine-rich repeat transmembrane protein
kinase, putative similar to receptor kinase GB:AAA33715
from [Petunia integrifolia]
Length = 670
Score = 28.7 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 10 NSWTSTQNVSSWVPITWARNRCSRSV 87
NSW +T N W ++ RNR +R V
Sbjct: 49 NSWNTTTNPCQWTGVSCNRNRVTRLV 74
>At1g26830.1 68414.m03270 cullin, putative similar to Cullin homolog
3 (CUL-3) SP:Q13618, GI:3639052 from [Homo sapiens];
contains Pfam profile PF00888: Cullin family
Length = 732
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 549 KNSSRIIYLLNNKTYENGEMFNMLRRVASEAPTL 448
+NS + LLN+K + G M+N+ RRV + T+
Sbjct: 271 ENSGLVNMLLNDKYEDLGRMYNLFRRVTNGLVTV 304
>At5g13260.1 68418.m01523 expressed protein
Length = 537
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 114 ARYWSHVARYGSAASVASPRYRH 46
ARYW +RYG + +A+ +Y +
Sbjct: 330 ARYWGLASRYGICSDIATSKYEY 352
>At5g18760.1 68418.m02228 zinc finger (C3HC4-type RING finger)
family protein predicted proteins, Arabidopsis thaliana
; contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 411
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +3
Query: 324 PPTTPASVQRKPLSSKLFPSLPKFQ-RVLLKSSTMYTS*SPVTRLELLKPPFSTC 485
P TP+ + LS K SLP ++ R+LL S TS P+ + P + C
Sbjct: 58 PKPTPSLGILRNLSLKRKASLPNYERRLLLSPSVSETSEKPLVASPITSPYWKRC 112
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 424 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 317
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 424 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 317
IVD N N R K++ E GFL+ GV GG +
Sbjct: 102 IVDGGNEWYENTERREKAVAENGFLYLGMGVSGGEE 137
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,557,634
Number of Sequences: 28952
Number of extensions: 450042
Number of successful extensions: 1465
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1461
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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