Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10461
         (830 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0258 - 11153709-11156090                                         31   1.1  
09_02_0036 + 3217163-3217584,3217752-3218322                           30   2.0  
02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411     30   2.0  
12_01_1024 - 10467644-10469274,10469424-10469482,10469820-104703...    30   2.6  
03_04_0133 + 17585278-17585282,17586257-17586386,17587444-175875...    29   6.0  

>05_03_0258 - 11153709-11156090
          Length = 793

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 256 NINAYNLPFAIQXRNCWEGRSVRASSLLRQLAKGGCAARRLSWVT 122
           N+N YNL F +  +   + R      +L ++++ GC   R++W T
Sbjct: 390 NVNTYNLIFGMLGK---KSRFTAMLEMLEEMSRSGCTPNRVTWNT 431


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 70  ITIHWPSFYNVV-TGKTLALPNLIALQH 150
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>02_05_0244 - 27130502-27130843,27130914-27131019,27132170-27132411
          Length = 229

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = -1

Query: 617 RPSARSFRFLPFLSRHVRRLSPSSSKSGAP 528
           R SA   R+ PFLSR  +R S  S+ SG P
Sbjct: 191 RRSATDGRYAPFLSRQPQRSSAGSTHSGKP 220


>12_01_1024 - 10467644-10469274,10469424-10469482,10469820-10470357,
            10470975-10471666,10471912-10472062,10473797-10473864,
            10473964-10474042,10474763-10474765,10476427-10477255
          Length = 1349

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 629  YTCQRPSA-RSFRFLPFLSRHVRRLSPSSSK 540
            Y CQ P   ++FRF+   SRH R+   SS K
Sbjct: 1313 YECQEPGCGQTFRFVSDFSRHKRKTGHSSDK 1343


>03_04_0133 +
           17585278-17585282,17586257-17586386,17587444-17587591,
           17587661-17587849,17587999-17589150,17589303-17589466
          Length = 595

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +3

Query: 654 HPPRLMRRYRARQVALFGEMCAEPLFVYFSKYIQICTAHETITLINASIILKKESL 821
           H  R +   R  QVA   +   EP ++Y +  I  C    +I   N   ++ +E+L
Sbjct: 143 HGKRPLSDVRPFQVAYLADETREPDYIYHNSGISACNTSSSIPYSNLEQLIGEENL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,699,627
Number of Sequences: 37544
Number of extensions: 479226
Number of successful extensions: 1156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)