Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10459
         (796 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    30   1.5  
At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   2.0  
At4g33630.2 68417.m04778 expressed protein                             28   8.2  
At4g33630.1 68417.m04777 expressed protein                             28   8.2  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   8.2  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   8.2  

>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 400 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVKH*SE 516
           T TPTS   G+K +++A  ++V   P  V W RG ++  S+
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVMEEISD 817


>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 344 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 445
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At4g33630.2 68417.m04778 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 610 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 512
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At4g33630.1 68417.m04777 expressed protein
          Length = 684

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 610 PSARSFRFLPFLSRHVRRLSPSSSKSGAPFRVP 512
           P +++  F P  S    RL+PSS +S  P R+P
Sbjct: 7   PPSQNLAFSPAASATSSRLTPSSKRSFYPHRLP 39


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 406 TPTSKGEKPSIRAMAHYVNHHP 471
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +2

Query: 50  PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 214
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,035,028
Number of Sequences: 28952
Number of extensions: 351245
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)