Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10458
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit L1...    28   1.8  
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    27   4.2  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   5.6  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    26   5.6  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   9.7  

>SPAC1486.07c |mrpl19||mitochondrial ribosomal protein subunit
           L19|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 144

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 742 KSTQFCMQLEQRPSGNVRNDPIPYKYELTFTLSRT 638
           KS  FC +   R +G + N P+P K  +T T  RT
Sbjct: 34  KSIDFCKEFNARTAGWMPNTPVPCK--ITVTPQRT 66


>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +1

Query: 568 YHVVLLAFRAGRPRVCVLSASYLTFSIA*RLTHI 669
           Y  V L F  G    C++S S+LTF++  +LT++
Sbjct: 481 YSSVKLGFMLG---TCIVSVSFLTFTVYAKLTNL 511


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
 Frame = -2

Query: 258 IGTPQVFA----WQLFVLHCVRSGALIK 187
           +G P+V A    W  FVLHC   G L++
Sbjct: 801 LGNPKVLAKHALWYHFVLHCKEKGYLVE 828


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 109 YHYGRRIGAIIPVK*DRSSMRFITFW 186
           +HY R  GA  P   + S+ RF+ FW
Sbjct: 219 FHYWRDPGAFAPYLVEGSTGRFLGFW 244


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 115 NGNEVYLKKNPESTFNTSAGDT 50
           NG   YL KN  S+FN +  DT
Sbjct: 591 NGLRTYLTKNSGSSFNGNPNDT 612


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,200
Number of Sequences: 5004
Number of extensions: 61986
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)