Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10458
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   7.8  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 60  ALVLKVDSGFFFKYTSLPLRKAYWSNY 140
           A+ +   S FFF ++ L L   YWS +
Sbjct: 356 AIYIDKVSRFFFPFSFLILNVVYWSTF 382


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 709 RPSGNVRNDPIPYKYELTFTLSRTLNNS 626
           RP  NVR   +P +Y  T + + T  N+
Sbjct: 908 RPERNVRQSMMPTRYSTTKSSAVTATNA 935


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 504 FLYILFQ*RKKSNKIQYIYSW 566
           FL+I+F       +I+ IYSW
Sbjct: 4   FLWIVFLALANGEEIKTIYSW 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,782
Number of Sequences: 438
Number of extensions: 4125
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)