Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10454
         (824 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    27   0.14 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.96 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.96 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      22   6.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.8  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           21   9.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    21   9.0  

>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = +3

Query: 339 WNTNHKKEAVLPALRKSLKNLDLDYVNLYLIHWPIALHENASISQTDYVETWQAMT 506
           +N   +KE +   +R         YV +Y+ H P+ L  +  I +   V+ +   T
Sbjct: 42  YNLVIRKEHIFERIRTIYNQFSTPYVGIYIFHQPVLLIRSPEILRKVLVKDFDKFT 97


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 429 LNIDSRNPNPNSSMIS*GPAKPP 361
           LN+      PN S+I  GPA PP
Sbjct: 144 LNLTMPKYEPNPSIIDPGPALPP 166


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -3

Query: 429 LNIDSRNPNPNSSMIS*GPAKPP 361
           LN+      PN S+I  GPA PP
Sbjct: 144 LNLTMPKYEPNPSIIDPGPALPP 166


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +1

Query: 67   LSLSAGLAPVLKLNNGKEIPGFGIGTWLGTNSNELKGDEVQKSV 198
            L L  G+   L L++ K   G G    L T +NEL+G     SV
Sbjct: 2653 LKLGGGMVWALDLDDFKNRCGCGKHPLLKTLNNELRGTPSDISV 2696


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -2

Query: 535 GLGQTLVQDSVIACHVST*SVW 470
           G+G  +V D V +C+ +  S W
Sbjct: 235 GVGTLVVNDVVASCYATIDSQW 256


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 362 GGFAGPQEIIEEFGFGLRESIFNSLADRSARKRLNFPNRLRG 487
           GG   PQ II++     R   F  + ++ A K L F     G
Sbjct: 43  GGGEIPQNIIQQQPQQARRRAFVKIIEQPASKALRFRYECEG 84


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 756 RWSSARGAGADGWRLNRLP 700
           R S++  A  DGW++  LP
Sbjct: 55  RPSTSAAADVDGWQVTPLP 73


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 781 CIFGRWHET 755
           C FGRW ET
Sbjct: 509 CGFGRWRET 517


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,140
Number of Sequences: 336
Number of extensions: 4551
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)