Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10454
         (824 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.64 
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    24   1.5  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   6.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   6.0  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.64
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 822 LHQISEYDL-RNGFLVFLGDGTRRWSSARGAGADGWRLNRLPKGVYATT 679
           L Q+ E  L RN  +   GD     +  R   A    L+ LP+G++A+T
Sbjct: 236 LRQLQELHLQRNAIVEIAGDALTGLTVLRTFNASYNSLDSLPEGLFAST 284


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 500 YDRVLNQGLTKSIGVSNFNIQQLERLKSEGGVTPSV 607
           Y  +   GLTK++ + N+NI   + + S     P V
Sbjct: 90  YKNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQV 125


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 545 SNFNIQQLERLKSEGGVTPSVLQVEINL 628
           S   I+ L +  +E    P+VL+V++NL
Sbjct: 94  STLPIEDLTKSDNEDITYPTVLEVQLNL 121


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 545 SNFNIQQLERLKSEGGVTPSVLQVEINL 628
           S   I+ L +  +E    P+VL+V++NL
Sbjct: 132 STLPIEDLTKSDNEDITYPTVLEVQLNL 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,855
Number of Sequences: 438
Number of extensions: 5452
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26338809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)