Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10453
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   164   1e-41
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    63   3e-11
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    60   4e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    42   6e-05
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    28   1.0  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    27   1.8  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   3.1  
SPCC1259.06 |||transcription factor TFIID complex subunit 8 |Sch...    26   4.2  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    26   5.5  
SPBC13E7.06 |msd1|mug172|spindle pole body protein Msd1|Schizosa...    26   5.5  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   9.6  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  164 bits (398), Expect = 1e-41
 Identities = 76/129 (58%), Positives = 96/129 (74%)
 Frame = +3

Query: 258 DPRHGRYLTVAAIFRGRMSMKEVDEQMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGLKM 437
           DPRHGRYLTVAA+FRG++SMKEVDEQ+ S+Q KNS++FVEWIP+NV  AVC +PPK LKM
Sbjct: 304 DPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPKDLKM 363

Query: 438 SSTFIGNTTAIQELFKRISEQFSACSDVKLSCTGTPARAWTRWSSTKQRATSNDLVSEYQ 617
           S+TFIGN+T+IQE+F+R+ +QFSA    K                T+  +  NDLVSEYQ
Sbjct: 364 SATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQ 423

Query: 618 QYQEATAED 644
           QYQEA  ++
Sbjct: 424 QYQEAGIDE 432



 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 35/49 (71%), Positives = 42/49 (85%)
 Frame = +1

Query: 103 QVAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELAQQMFDAKNMM 249
           ++AVNMVPFPRLHFFM GFAPL + GS  ++A++VPEL QQMFDA NMM
Sbjct: 252 KLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMM 300



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 24/34 (70%), Positives = 29/34 (85%)
 Frame = +2

Query: 5   NPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRK 106
           +P+Y DLNHLVS  M+GVTT  RFPG+LN+DLRK
Sbjct: 219 SPSYDDLNHLVSAVMAGVTTSFRFPGELNSDLRK 252


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
 Frame = +3

Query: 252 RCDPRHGRYLTVAAIFRGRMSMKEVDEQMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGL 431
           +CDPR GRY+    ++RG +  ++V   + +I+ K +  FV+W P   K  +CD PP+ +
Sbjct: 304 KCDPRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHI 363

Query: 432 KMSS--------TFIGNTTAIQELFKRISEQF 503
           + S           + NTT+I E + R+  +F
Sbjct: 364 EGSEIAKVDRAVCMLSNTTSIAEAWSRLDHKF 395



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = +2

Query: 509 MFRRKAFLHWYTGEGMDEMEFNEAESNV 592
           M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct: 398 MYSKRAFVHWYVGEGMEEGEFSEAREDL 425



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +1

Query: 100 AQVAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELAQQMFDAKNMM 249
           A+   N+VP+PR+HF +  +AP+ S     + + +V E+  Q F+  N M
Sbjct: 253 AEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQM 302



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 16/40 (40%), Positives = 26/40 (65%)
 Frame = +2

Query: 8   PTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKWRSTWCP 127
           P+Y +LN L++  +S +T  LRF G LN DL ++++   P
Sbjct: 222 PSYENLNRLIAQVVSSITASLRFEGSLNVDLAEFQTNLVP 261


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 8/92 (8%)
 Frame = +3

Query: 252 RCDPRHGRYLTVAAIFRGRMSMKEVDEQMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGL 431
           +CDPR GRY+    ++RG +  ++V   + SI+++ +  FV+W P   K  +C  PP+ +
Sbjct: 308 KCDPRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHV 367

Query: 432 KMSS--------TFIGNTTAIQELFKRISEQF 503
             S           + NTT+I E + R+  +F
Sbjct: 368 PGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKF 399



 Score = 43.2 bits (97), Expect = 3e-05
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = +2

Query: 509 MFRRKAFLHWYTGEGMDEMEFNEAESNV 592
           M+ ++AF+HWY GEGM+E EF+EA  ++
Sbjct: 402 MYSKRAFVHWYVGEGMEEGEFSEAREDL 429



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 17/40 (42%), Positives = 26/40 (65%)
 Frame = +2

Query: 8   PTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKWRSTWCP 127
           PTY +LN L++  +S +T  LRF G LN DL ++++   P
Sbjct: 226 PTYENLNRLIAQVVSSITASLRFAGSLNVDLNEFQTNLVP 265



 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = +1

Query: 115 NMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELAQQMFDAKNMM 249
           N+VP+PR+HF +  ++P+ S     + + +V E+  Q F+  N M
Sbjct: 262 NLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQM 306


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 21/45 (46%), Positives = 26/45 (57%)
 Frame = +2

Query: 5   NPTYGDLNHLVSLTMSGVTTCLRFPGQLNADLRKWRSTWCPSRVC 139
           NPT+   N LVS  MS  TT LR+PG +N DL    ++  PS  C
Sbjct: 222 NPTFHQQNQLVSTVMSASTTTLRYPGYMNNDLVSIIASLIPSPRC 266



 Score = 32.3 bits (70), Expect = 0.063
 Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +1

Query: 106 VAVNMVPFPRLHFFMPGFAPLTSRGSQQYRAL---TVPELAQQMFDAKNMM 249
           +  +++P PR HF +  + P T++  ++ +A+   TV ++ +++   KN M
Sbjct: 256 IIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQM 306


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 633  WPPGTVGTQTPDRLTLLSASLNSISSM 553
            W  GT+  QTPD ++L S SL++  S+
Sbjct: 1096 WMEGTMEDQTPDDISLASTSLSTNRSL 1122


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 421 GGMSHTAVFTLLGIHSTKKLLFLFWMESICSSTSFMDMRPRKMA 290
           GG S   +  LLG + T K  F  WM    +S   + M+P+ +A
Sbjct: 370 GGFSDAEIIVLLGENGTGKTTFCKWMAK--NSDLKISMKPQTIA 411


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/69 (23%), Positives = 30/69 (43%)
 Frame = +1

Query: 448 LSGTRQPSRNYSREYPSSSLHVQT*SFLALVHRRGHGRDGVQRSREQRQTIWCLSTNSTR 627
           LS TR+   N      ++ +  Q   F++ + +      G +  + +RQTI+    NST+
Sbjct: 448 LSATRKTGDNTKDRKQANKVRRQDQFFISHIQKYASSLTGAKGGQLKRQTIFTQGPNSTK 507

Query: 628 RPPRKTTTE 654
              +    E
Sbjct: 508 ESKQAVKEE 516


>SPCC1259.06 |||transcription factor TFIID complex subunit 8
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 222

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 85  AERRPAQVAVNMVPFPRLHFFM-PGFAPLTSRGSQQYRALTVPE 213
           ++ RPA V  ++ PFP  H +M     P+     +Q R L   E
Sbjct: 123 SQNRPAYVVNHLPPFPASHTYMATPVYPVRPTSPKQIRELATQE 166


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +3

Query: 333 QMLSIQNKNSSFFVEWIPNNVKTAVCDIPPKGLKMSSTFIG 455
           ++ SI+ K  SF+ E +P  + TAV   P  GL ++ TF+G
Sbjct: 375 RLWSIKEKAVSFWNE-LPELI-TAVAFSPDGGLAIAGTFVG 413


>SPBC13E7.06 |msd1|mug172|spindle pole body protein
           Msd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 594 LTLLSASLNSISSMPSPVYQ 535
           LT LS +LNS+  M SP+Y+
Sbjct: 234 LTCLSGTLNSLVEMLSPLYE 253


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 476 TIQENIRAVLCMFRRKAFLHWY 541
           ++ E  R +LC F R++ LH++
Sbjct: 72  SVDEEGRCILCNFLRRSVLHYF 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,498
Number of Sequences: 5004
Number of extensions: 48697
Number of successful extensions: 197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)