Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10452
(710 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 105 4e-23
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 105 4e-23
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl... 28 5.3
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 27 9.3
At3g18050.1 68416.m02296 expressed protein 27 9.3
At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (ST... 27 9.3
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 105 bits (251), Expect = 4e-23
Identities = 45/84 (53%), Positives = 58/84 (69%)
Frame = +1
Query: 256 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 435
V KG YGKP + GV QLK R+ +S+AEE +SYW+ +DS+YKY+E+IL
Sbjct: 75 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134
Query: 436 VDPSHKAIRRDPKINWIVNAVHKH 507
VDP+H A+R DP+INWI N VHKH
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKH 158
Score = 94.7 bits (225), Expect = 5e-20
Identities = 42/59 (71%), Positives = 49/59 (83%)
Frame = +2
Query: 35 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 211
MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ + R RPTRPDKARRLGY+AKQG+
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGF 59
Score = 48.4 bits (110), Expect = 5e-06
Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 510 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 644
E+RGLTS G+ +RGL GKGH + + SRRA W + N++ LRR R
Sbjct: 160 ELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 105 bits (251), Expect = 4e-23
Identities = 45/84 (53%), Positives = 58/84 (69%)
Frame = +1
Query: 256 VAKGATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXSSYWVAQDSSYKYFEVIL 435
V KG YGKP + GV QLK R+ +S+AEE +SYW+ +DS+YKY+E+IL
Sbjct: 75 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134
Query: 436 VDPSHKAIRRDPKINWIVNAVHKH 507
VDP+H A+R DP+INWI N VHKH
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKH 158
Score = 94.7 bits (225), Expect = 5e-20
Identities = 42/59 (71%), Positives = 49/59 (83%)
Frame = +2
Query: 35 MGAYRYIQELYRKKLSDVMRFLLRVRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGY 211
MGAY+Y+ EL+RKK SDVMRFL RVR W+YRQ + R RPTRPDKARRLGY+AKQG+
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGF 59
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = +3
Query: 510 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 644
E+RGLTS G+ +RGL GKGH + + SRRA W + N+L LRR R
Sbjct: 160 ELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204
>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
(FAD7) (FADD) identical to omega-3 fatty acid
desaturase, chloroplast precursor SP:P46310 [Arabidopsis
thaliana (Mouse-ear cress)]; identical to Pfam profile
PF00487: Fatty acid desaturase; identical to cDNA
plastid fatty acid desaturase GI:809491
Length = 446
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 388 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 489
YW+AQ + + V+ D H + DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 27.5 bits (58), Expect = 9.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 110 RVWQYRQLTRMHRAPRPTRPD 172
++W+Y LTR++ P+ PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305
>At3g18050.1 68416.m02296 expressed protein
Length = 335
Score = 27.5 bits (58), Expect = 9.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 173 CPALWAWERGAYESTDGTAIPSHATKNA*HRSVFSYTTPE 54
CP L AW AY +T + S A +N+ S + TTPE
Sbjct: 82 CPVLGAWLYSAYSTTALSRSISAAARNS-SSSSAAVTTPE 120
>At1g62360.1 68414.m07036 homeobox protein SHOOT MERISTEMLESS (STM)
identical to homeobox protein SHOOT MERISTEMLESS (STM)
SP:Q38874 from [Arabidopsis thaliana]
Length = 382
Score = 27.5 bits (58), Expect = 9.3
Identities = 26/108 (24%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Frame = -2
Query: 415 CMKNLVQPSKSSTHGDHRNDGQHVPQQWIEGCAWASTG*HHGSWACHKWHP*QLTL--AA 242
C ++ P ++H H +D QH QQ +G A+ S S P Q T A
Sbjct: 24 CPMMMMMPPIMTSHQHHGHDHQH-QQQEHDGYAYQSHHQQSSSLFLQSLAPPQGTKNKVA 82
Query: 241 TTSHADS---EYNITLFSTVA*SSGFVRPCGPGSAVHTSQLTVLPYPH 107
++S S Y++ +G + PC S+ + + ++ +PH
Sbjct: 83 SSSSPSSCAPAYSLMEIHHNEIVAGGINPCSSSSSSASVKAKIMAHPH 130
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,363,237
Number of Sequences: 28952
Number of extensions: 308742
Number of successful extensions: 718
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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