Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10451
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0648 + 20257442-20257528,20257688-20257867,20258055-202581... 101 1e-22
07_03_0646 + 20250684-20250686,20251522-20251701,20251899-202519... 101 1e-22
07_03_0643 + 20239224-20239310,20239470-20239649,20239837-202399... 101 1e-22
07_03_0641 + 20214245-20214247,20215086-20215265,20215463-202155... 101 1e-22
07_03_0640 + 20207497-20207554,20208457-20208482,20208522-202087... 101 1e-22
07_03_0639 + 20203902-20203988,20204152-20204331,20204529-202046... 101 1e-22
07_03_0226 + 15395380-15395382,15396993-15397172,15397286-153973... 101 1e-22
07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561 50 6e-07
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 29 0.70
07_03_1268 + 25328448-25328506,25328589-25328768,25328872-253289... 29 0.93
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426... 29 1.2
08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029 28 2.1
12_02_0879 + 23960084-23961551,23961796-23962184 27 3.8
03_03_0266 - 16014740-16015045,16015566-16015601,16015623-160156... 27 5.0
11_01_0266 - 2010572-2011879 26 6.6
04_03_0313 + 14233049-14234362,14234558-14235523 26 6.6
06_01_0302 + 2188905-2188989,2189309-2189406,2189487-2189753,218... 26 8.7
01_01_1106 + 8750597-8754031 26 8.7
>07_03_0648 +
20257442-20257528,20257688-20257867,20258055-20258129,
20258230-20258289
Length = 133
Score = 101 bits (242), Expect = 1e-22
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F IVL+L+C CK SQ +
Sbjct: 54 TQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPI 113
Query: 214 KRCKHFELGGDKK 252
KRCKHFE+GGDKK
Sbjct: 114 KRCKHFEIGGDKK 126
>07_03_0646 +
20250684-20250686,20251522-20251701,20251899-20251973,
20252072-20252131
Length = 105
Score = 101 bits (242), Expect = 1e-22
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F IVL+L+C CK SQ +
Sbjct: 26 TQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPI 85
Query: 214 KRCKHFELGGDKK 252
KRCKHFE+GGDKK
Sbjct: 86 KRCKHFEIGGDKK 98
>07_03_0643 +
20239224-20239310,20239470-20239649,20239837-20239911,
20240012-20240071
Length = 133
Score = 101 bits (242), Expect = 1e-22
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F IVL+L+C CK SQ +
Sbjct: 54 TQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPI 113
Query: 214 KRCKHFELGGDKK 252
KRCKHFE+GGDKK
Sbjct: 114 KRCKHFEIGGDKK 126
>07_03_0641 +
20214245-20214247,20215086-20215265,20215463-20215537,
20215636-20215695
Length = 105
Score = 101 bits (242), Expect = 1e-22
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F IVL+L+C CK SQ +
Sbjct: 26 TQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPI 85
Query: 214 KRCKHFELGGDKK 252
KRCKHFE+GGDKK
Sbjct: 86 KRCKHFEIGGDKK 98
>07_03_0640 +
20207497-20207554,20208457-20208482,20208522-20208701,
20208891-20208965,20209062-20209121
Length = 132
Score = 101 bits (242), Expect = 1e-22
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F IVL+L+C CK SQ +
Sbjct: 53 TQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPI 112
Query: 214 KRCKHFELGGDKK 252
KRCKHFE+GGDKK
Sbjct: 113 KRCKHFEIGGDKK 125
>07_03_0639 +
20203902-20203988,20204152-20204331,20204529-20204603,
20204696-20204755
Length = 133
Score = 101 bits (242), Expect = 1e-22
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F IVL+L+C CK SQ +
Sbjct: 54 TQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPI 113
Query: 214 KRCKHFELGGDKK 252
KRCKHFE+GGDKK
Sbjct: 114 KRCKHFEIGGDKK 126
>07_03_0226 +
15395380-15395382,15396993-15397172,15397286-15397360,
15397466-15397525
Length = 105
Score = 101 bits (242), Expect = 1e-22
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYKK K+ +AQG+RRYDRKQ GYGGQ+KP+F IVL+L+C CK SQ +
Sbjct: 26 TQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLKLQCQSCKHYSQHPI 85
Query: 214 KRCKHFELGGDKK 252
KRCKHFE+GGDKK
Sbjct: 86 KRCKHFEIGGDKK 98
>07_03_0645 + 20244889-20244942,20245331-20245405,20245502-20245561
Length = 62
Score = 49.6 bits (113), Expect = 6e-07
Identities = 20/31 (64%), Positives = 25/31 (80%)
Frame = +1
Query: 160 IVLRLECADCKVRSQVALKRCKHFELGGDKK 252
IVL+L+C CK SQ +KRCKHF++GGDKK
Sbjct: 25 IVLKLQCQSCKHYSQHPIKRCKHFKIGGDKK 55
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 29.5 bits (63), Expect = 0.70
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 110 VVSPNPSSKRRQKPLRKLCSVLSVPIAR 193
VV+P P +R+Q+PL C S+P R
Sbjct: 58 VVAPAPRHRRKQRPLHYACRPTSLPCRR 85
>07_03_1268 +
25328448-25328506,25328589-25328768,25328872-25328974,
25329095-25329119,25329587-25329614,25330603-25330755,
25331339-25333421,25333666-25334983,25335256-25335339,
25335756-25335769
Length = 1348
Score = 29.1 bits (62), Expect = 0.93
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 38 STKSPRKGTLPRVEDVMIVNSRV 106
++ SP+K T PRVED M++ S +
Sbjct: 451 ASSSPQKQTAPRVEDDMVITSSI 473
>03_04_0161 +
17838466-17838551,17842379-17842445,17842537-17842662,
17842756-17842886,17843121-17843220,17843334-17843466,
17843500-17843544,17843545-17843608,17843692-17844469,
17844897-17845229,17845427-17845634,17845733-17845809,
17846168-17846240,17846343-17846413,17846597-17846716,
17846815-17846879,17846974-17847124
Length = 875
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 79 RRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVALKRCK 225
+ + + QG GG S +F ++LE ADC + +V RCK
Sbjct: 207 KELEGRLQGIGGFSNCLFTFLFAGVSMDEVKLEQADCDMDERVYCDRCK 255
>08_01_0904 - 8916550-8917730,8917762-8918534,8919200-8920029
Length = 927
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 306 RQWSYLLEAFKI-GSSVPSLLVTTELKVLASLQCN 205
R+W +L+ + I SSVP+L L+VL +CN
Sbjct: 544 RKWKFLVRSLTIRNSSVPNLKEYKSLRVLDLEECN 578
>12_02_0879 + 23960084-23961551,23961796-23962184
Length = 618
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +2
Query: 2 KNVNATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKL 163
K V ATK+ R +S +P+V+++ V S TV+ + S RQ L+ L
Sbjct: 323 KVVRATKFNRDKKFRSTVASNVPKVKEIK-VTSPATVMDQS-SKPTRQSKLKSL 374
>03_03_0266 -
16014740-16015045,16015566-16015601,16015623-16015643,
16016331-16016591,16017504-16018985,16019834-16019989,
16020154-16020277,16020399-16020615,16020877-16021774,
16022947-16023291,16023371-16023565,16023751-16024453,
16024866-16025467
Length = 1781
Score = 26.6 bits (56), Expect = 5.0
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 14 ATKYTRYHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSS 133
+T T + + K P G++ + NS V +V P PS+
Sbjct: 821 STNITNFANLKEPFDGSIDLANVENVTNSNVVMVQPVPST 860
>11_01_0266 - 2010572-2011879
Length = 435
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDR 93
S+ +K+++RH A+G+ YD+
Sbjct: 3 SEKRKTRDRHGARGKASYDK 22
>04_03_0313 + 14233049-14234362,14234558-14235523
Length = 759
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 306 RQWSYLLEAFKIGSSVPSLLVTTELKVLASLQC 208
R+W L K G +LVTT L+ +A+L C
Sbjct: 337 REWEELNALLKDGLKGSMILVTTRLQNVANLVC 369
>06_01_0302 +
2188905-2188989,2189309-2189406,2189487-2189753,
2189906-2189947,2190071-2190078,2190230-2190273,
2190615-2190695,2190779-2190907,2191017-2191114,
2191188-2191448,2191537-2191581,2191748-2191881,
2191965-2192045,2192127-2192308,2192632-2192746,
2192873-2193056,2193144-2193329
Length = 679
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 83 RLLPWAACLSLDFLYCDTLCTLWHLHF 3
RL+PW L FL C T C + L +
Sbjct: 349 RLVPWTGTLDCQFLACST-CKITKLKY 374
>01_01_1106 + 8750597-8754031
Length = 1144
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -2
Query: 95 LRS*RLLPWAACLSLDFLYCDTLCTLWHLHF 3
L+S LL C +L+ L DT+C+L +LHF
Sbjct: 540 LQSLHLLNLKGCGNLEILP-DTICSLQNLHF 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,984,979
Number of Sequences: 37544
Number of extensions: 147164
Number of successful extensions: 404
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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