Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10451
(339 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0) 105 1e-23
SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026) 61 2e-10
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2) 25 1.6
SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20) 28 1.7
SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19) 27 2.9
SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15) 27 3.9
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 27 5.1
SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26) 27 5.1
SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12) 27 5.1
SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_23678| Best HMM Match : Complex1_30kDa (HMM E-Value=6.8) 26 6.8
SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.8
SB_28235| Best HMM Match : rve (HMM E-Value=2.7e-11) 26 6.8
SB_3738| Best HMM Match : efhand (HMM E-Value=8.5e-05) 26 6.8
SB_15116| Best HMM Match : rve (HMM E-Value=5.8e-17) 26 9.0
SB_7514| Best HMM Match : OATP (HMM E-Value=0) 26 9.0
SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13) 26 9.0
SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14) 26 9.0
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.0
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 26 9.0
>SB_33724| Best HMM Match : Ribosomal_L44 (HMM E-Value=0)
Length = 113
Score = 105 bits (251), Expect = 1e-23
Identities = 46/75 (61%), Positives = 54/75 (72%)
Frame = +1
Query: 34 SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
+QYK K AQG+RRYDRKQ G+GGQ+KP+F IVLR+EC CK R Q+ L
Sbjct: 33 TQYKTGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKIVLRMECTQCKYRKQMPL 92
Query: 214 KRCKHFELGGDKKRR 258
KRCKHFELGGDKKR+
Sbjct: 93 KRCKHFELGGDKKRK 107
>SB_37591| Best HMM Match : Ribosomal_L44 (HMM E-Value=0.026)
Length = 39
Score = 61.3 bits (142), Expect = 2e-10
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = +1
Query: 160 IVLRLECADCKVRSQVALKRCKHFELGGDKKRR 258
IVLR+EC CK R Q+ LKRCKHFELGGDKKR+
Sbjct: 7 IVLRMECTQCKYRKQMPLKRCKHFELGGDKKRK 39
>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
Length = 474
Score = 24.6 bits (51), Expect(2) = 1.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 196 RSQVALKRCKHFELGGD 246
+S++A RC H LGGD
Sbjct: 419 QSRIAFPRCAHGPLGGD 435
Score = 22.2 bits (45), Expect(2) = 1.6
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 49 SKERHAAQGRRRYDRKQQGYGGQSKPIF 132
++ RH + RRRY + G QS+ F
Sbjct: 397 AERRHNGRDRRRYGQPDSGDVRQSRIAF 424
>SB_20022| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-20)
Length = 392
Score = 28.3 bits (60), Expect = 1.7
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = -3
Query: 265 ICPFSSC-------HHRAQSACISSMQPVISPCNRHTQDGAQFS*WFLPSF*RWVWTDHR 107
ICP S+C + RA A I V++P G F + P +WVW +H
Sbjct: 83 ICPVSNCRITTAKGNFRASDAVI--FHGVMTP--HEVTSGELFK--YKPKDQKWVWYEHE 136
Query: 106 NPAVYDHN 83
NP +N
Sbjct: 137 NPVKMSNN 144
>SB_40225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1442
Score = 27.9 bits (59), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 172 LECADCKVRSQVALKRCKHFELG 240
+EC +CK R +A C HF+ G
Sbjct: 1113 IECPNCKFRYDLAKGGCMHFKCG 1135
>SB_9088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 884
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 74 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 187
+ D+ N+R+T +P + K R+ PL+ L VP+
Sbjct: 676 ISDINATNTRMTGFAPKDAKKLRRVPLKAEKPPLEVPL 713
>SB_55326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1289
Score = 27.5 bits (58), Expect = 2.9
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 74 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 187
+ D+ +R+T VSP + K R+ PL+ L VP+
Sbjct: 1058 ISDINATKTRMTGVSPKDAIKLRRVPLKAEKPPLEVPL 1095
>SB_48686| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 722
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 74 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 187
+ D+ N+R+T +P + K R+ PL+ L VP+
Sbjct: 624 ISDINATNTRMTGFAPKDAKKLRRVPLKAEKPPLEVPL 661
>SB_4035| Best HMM Match : DUF1279 (HMM E-Value=0.15)
Length = 1575
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 32 YHSTKSPRK-GTLPRVEDV--MIVNSRVTVVSPNPSSKRRQK 148
Y + P+K G RV+++ ++ R T+ PN S RRQ+
Sbjct: 1011 YEAAWDPKKSGNTERVQELQGVVTTDRQTIDDPNTSESRRQE 1052
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 26.6 bits (56), Expect = 5.1
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 20 KYTRYHS-TKSPRKGTLPRVEDVMI--VNSRVTVVSPNPSSKRRQ 145
K TRY S T S R P ++ + +NS SP+PS+KR +
Sbjct: 2061 KSTRYSSRTSSNRDSRTPPADEKIRADINSNEVQSSPSPSTKREE 2105
>SB_45117| Best HMM Match : Band_41 (HMM E-Value=7.4e-26)
Length = 458
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 44 KSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVP 184
K PR+ L + + V++ NS T + ++ LR++C L++P
Sbjct: 61 KMPRESGLFKCQVVLLDNSTFTTSFEKRKETKGKELLRRVCIELNIP 107
>SB_42699| Best HMM Match : SIR2 (HMM E-Value=1.6e-12)
Length = 501
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 46 KSKERHAAQGRRRYDRKQQGY 108
K K+RHA Q YD+K Q Y
Sbjct: 471 KQKDRHARQLGINYDKKHQNY 491
>SB_30079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 196 RSQVALKRCKHFELGGDKKR 255
+S++A RC H LGGD +R
Sbjct: 495 QSRIASPRCAHRPLGGDSRR 514
>SB_23678| Best HMM Match : Complex1_30kDa (HMM E-Value=6.8)
Length = 207
Score = 26.2 bits (55), Expect = 6.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 74 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 187
VED+ +R+T +P + K R+ PL+ L VP+
Sbjct: 53 VEDINATKTRMTGFAPKDAIKLRRVPLKAEKPPLMVPL 90
>SB_46402| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 196 RSQVALKRCKHFELGGD 246
RS++A RC H LGGD
Sbjct: 504 RSRIAFTRCAHGPLGGD 520
>SB_28235| Best HMM Match : rve (HMM E-Value=2.7e-11)
Length = 188
Score = 26.2 bits (55), Expect = 6.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +2
Query: 62 TLPRV-EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 187
TLP V D+ +R+T ++P + K R+ PL+ L VP+
Sbjct: 127 TLPIVISDINATKTRMTGLAPEDAIKLRRVPLKAERPPLEVPL 169
>SB_3738| Best HMM Match : efhand (HMM E-Value=8.5e-05)
Length = 447
Score = 26.2 bits (55), Expect = 6.8
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +1
Query: 193 VRSQVALKRCKHFELGGDKKRRDR 264
+R +VA+ + K+FE D+KR++R
Sbjct: 351 IRDKVAMSKQKYFERLHDRKRKER 374
>SB_15116| Best HMM Match : rve (HMM E-Value=5.8e-17)
Length = 317
Score = 25.8 bits (54), Expect = 9.0
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +2
Query: 41 TKSPRKGTLPRV-EDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 187
T S TLP V D+ +R+T ++P + K R+ PL+ L VP+
Sbjct: 203 TNSEWVTTLPIVISDMNATKTRMTGLAPEDAIKLRRVPLKAEKPPLEVPL 252
>SB_7514| Best HMM Match : OATP (HMM E-Value=0)
Length = 763
Score = 25.8 bits (54), Expect = 9.0
Identities = 9/21 (42%), Positives = 10/21 (47%)
Frame = -2
Query: 71 WAACLSLDFLYCDTLCTLWHL 9
W L F+ C TLC W L
Sbjct: 331 WVGAWWLGFVVCGTLCIFWSL 351
>SB_5648| Best HMM Match : rve (HMM E-Value=6.1e-13)
Length = 1606
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 74 VEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVPI 187
+ D+ +RVT ++P + K R+ PL+ L VP+
Sbjct: 1186 ISDMNATKTRVTGLAPEDAIKLRRVPLKAKKPPLEVPL 1223
>SB_48542| Best HMM Match : Glyco_transf_10 (HMM E-Value=1.1e-14)
Length = 594
Score = 25.8 bits (54), Expect = 9.0
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -3
Query: 142 PSF*RWVWTDHRNPA 98
P+ +WVW +H NPA
Sbjct: 306 PARQKWVWYEHENPA 320
>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1564
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +2
Query: 65 LPRVEDVMIVNSRVT--VVSPNPSSKRRQKPLRKLCSVLS 178
+ +VE++++ + +V V +P+P+ R P LC +LS
Sbjct: 382 ISKVEELLVASCKVPEKVNAPSPAQTLRSLPRVSLCYILS 421
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +2
Query: 38 STKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLSVP 184
+ K P K T+P ED ++ +V + S ++ PLR + S SVP
Sbjct: 191 NNKDPVK-TIPNKEDNASLSRTRSVYDNDSLSSDKKDPLRPMISYRSVP 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,267,260
Number of Sequences: 59808
Number of extensions: 179467
Number of successful extensions: 855
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 485763447
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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