Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10451
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...   106   4e-24
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...   106   4e-24
Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical pr...    27   4.5  
L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    26   6.0  
U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin prote...    26   6.0  
U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin prote...    26   6.0  
U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin prote...    26   6.0  
U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin prote...    26   6.0  
AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin pro...    26   6.0  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score =  106 bits (255), Expect = 4e-24
 Identities = 47/75 (62%), Positives = 55/75 (73%)
 Frame = +1

Query: 34  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
           +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +
Sbjct: 25  TQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPI 84

Query: 214 KRCKHFELGGDKKRR 258
           KRCKHFELGG KK R
Sbjct: 85  KRCKHFELGGQKKSR 99


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score =  106 bits (255), Expect = 4e-24
 Identities = 47/75 (62%), Positives = 55/75 (73%)
 Frame = +1

Query: 34  SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECADCKVRSQVAL 213
           +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF         IVLR+EC +CK + Q+ +
Sbjct: 25  TQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKKAKTTKKIVLRMECTECKHKKQLPI 84

Query: 214 KRCKHFELGGDKKRR 258
           KRCKHFELGG KK R
Sbjct: 85  KRCKHFELGGQKKSR 99


>Z81497-1|CAB04077.1| 1081|Caenorhabditis elegans Hypothetical
           protein F10C2.4 protein.
          Length = 1081

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 29  RYHSTKSPRKGTLPRV-EDVMIVNSR 103
           +Y +TKS R+G LP + ED++    R
Sbjct: 612 QYFATKSKRRGLLPEILEDILAARKR 637


>L23646-1|AAA28041.1|  244|Caenorhabditis elegans Hypothetical
           protein F44E2.3 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 166 LRLECADCKVRSQVALKRCKHFELGGDKK 252
           + +E A+CK R + + K+CK  E   ++K
Sbjct: 152 MAVELAECKKRDEESRKKCKQLEAELERK 180


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -1

Query: 273 IGSSVPSLLVTTELKVLASLQCNL*SHLAIGTLKTEHNFLSGFCLLFED 127
           I   V  +L  ++  + AS + N+  H  +  L TEH  +  F   F+D
Sbjct: 344 IAEDVKPVLTVSDSDITASNRNNIDDHNRVIELSTEHKTMGEFQYNFDD 392


>U00032-4|AAL32216.1|  953|Caenorhabditis elegans Rabphilin protein
           1, isoform a protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 98  SRVTVVSPNPSSKRRQKPLRKLCSVLSVPIAR*DHRLH*RDASTLSSVVTRREGTDDPIL 277
           S  ++V+P P    R  P    C+  S P+   +H+     AST SS   RR G+ +P+L
Sbjct: 491 SGTSLVTPPPPISSRTSPDN--CN--SSPLNVMEHKSS--SASTASSGGNRRVGSAEPVL 544

Query: 278 N 280
           N
Sbjct: 545 N 545


>U00032-3|AAL32217.1| 1028|Caenorhabditis elegans Rabphilin protein
           1, isoform b protein.
          Length = 1028

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 98  SRVTVVSPNPSSKRRQKPLRKLCSVLSVPIAR*DHRLH*RDASTLSSVVTRREGTDDPIL 277
           S  ++V+P P    R  P    C+  S P+   +H+     AST SS   RR G+ +P+L
Sbjct: 566 SGTSLVTPPPPISSRTSPDN--CN--SSPLNVMEHKSS--SASTASSGGNRRVGSAEPVL 619

Query: 278 N 280
           N
Sbjct: 620 N 620


>U00032-2|AAL32218.1|  962|Caenorhabditis elegans Rabphilin protein
           1, isoform c protein.
          Length = 962

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 98  SRVTVVSPNPSSKRRQKPLRKLCSVLSVPIAR*DHRLH*RDASTLSSVVTRREGTDDPIL 277
           S  ++V+P P    R  P    C+  S P+   +H+     AST SS   RR G+ +P+L
Sbjct: 500 SGTSLVTPPPPISSRTSPDN--CN--SSPLNVMEHKSS--SASTASSGGNRRVGSAEPVL 553

Query: 278 N 280
           N
Sbjct: 554 N 554


>U00032-1|AAM48523.1| 1106|Caenorhabditis elegans Rabphilin protein
           1, isoform d protein.
          Length = 1106

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 98  SRVTVVSPNPSSKRRQKPLRKLCSVLSVPIAR*DHRLH*RDASTLSSVVTRREGTDDPIL 277
           S  ++V+P P    R  P    C+  S P+   +H+     AST SS   RR G+ +P+L
Sbjct: 644 SGTSLVTPPPPISSRTSPDN--CN--SSPLNVMEHKSS--SASTASSGGNRRVGSAEPVL 697

Query: 278 N 280
           N
Sbjct: 698 N 698


>AF399852-1|AAK84870.1|  953|Caenorhabditis elegans rabphilin
           protein.
          Length = 953

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +2

Query: 98  SRVTVVSPNPSSKRRQKPLRKLCSVLSVPIAR*DHRLH*RDASTLSSVVTRREGTDDPIL 277
           S  ++V+P P    R  P    C+  S P+   +H+     AST SS   RR G+ +P+L
Sbjct: 491 SGTSLVTPPPPISSRTSPDN--CN--SSPLNVMEHKSS--SASTASSGGNRRVGSAEPVL 544

Query: 278 N 280
           N
Sbjct: 545 N 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,720,532
Number of Sequences: 27780
Number of extensions: 126538
Number of successful extensions: 396
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 389
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 396
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)