Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10450
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   7.8  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 576 FDSIQRRAVRIVDNPNVTDRLEPLGL 653
           +DSI+ R   I D   +T+   PLGL
Sbjct: 167 YDSIEARDSAIFDGDFITENNLPLGL 192


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -1

Query: 706 HSPWNIRYKIQREPKSL 656
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = -3

Query: 665 EVPPQTQRFQTIRDIGIIDNPNGPPLYGVKWKK 567
           E+ P TQ     R      N  G P+  V W K
Sbjct: 311 EIEPSTQTIDFGRPATFTCNVRGNPIKTVSWLK 343


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 130 SPVLSSA*QCMPSIDSMSLI 71
           +PVL S  Q  PSIDS + I
Sbjct: 531 TPVLPSRFQSHPSIDSANTI 550


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 264,750
Number of Sequences: 438
Number of extensions: 6279
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)