Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10449
         (467 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    28   0.82 
SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   3.3  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    25   4.4  
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch...    25   4.4  

>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 27.9 bits (59), Expect = 0.82
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 247 HQVKSERYANFALDENVLSH 306
           H   +E++ANF L EN+L+H
Sbjct: 481 HLKDTEKFANFKLKENILNH 500


>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 349 VVLCYFKINTLVIICTVYLYIRNYIENK 432
           + +CY  IN LV++    L+  NY+  K
Sbjct: 589 IAICYACINPLVLLFASVLFCVNYLTQK 616


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 402 INSTYYNESIDFKITQNNK*YCFSFHF 322
           ++ST YN S+D+  ++N K  C   HF
Sbjct: 29  LDSTAYNNSLDWLRSKNFKVSCLLKHF 55


>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 106 NAFRTFYCFKSLNQENDKNTF 44
           N  +   CFKS   END  TF
Sbjct: 21  NELKRLSCFKSFTYENDLKTF 41


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,855
Number of Sequences: 5004
Number of extensions: 33287
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)