Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10449
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    27   7.5  
12_01_0104 - 816185-816602,816710-816817,816910-817037                 27   10.0 
11_01_0104 - 781471-781888,781994-782101,782195-782511                 27   10.0 

>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 209 LLISLSKNDLSHESQKIISTSNLKNCESHLIKT 111
           L  S++ NDL  E QK + T+   +CE  +IKT
Sbjct: 590 LATSITSNDLE-EIQKFLDTAVNSSCEGLIIKT 621


>12_01_0104 - 816185-816602,816710-816817,816910-817037
          Length = 217

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 247 HQVKSERYANFALDENVLSHYGTNFEMER 333
           H+V+ ER+ N  + +N +  Y  +FE+ER
Sbjct: 158 HEVQDERFENLCMVQN-MPEYLIDFELER 185


>11_01_0104 - 781471-781888,781994-782101,782195-782511
          Length = 280

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 247 HQVKSERYANFALDENVLSHYGTNFEMER 333
           H+V+ ER+ N  + +N +  Y  +FE+ER
Sbjct: 221 HEVQDERFENLCMVQN-MPEYLIDFELER 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,988,198
Number of Sequences: 37544
Number of extensions: 151203
Number of successful extensions: 271
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)