Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10449
         (467 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7010| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.5  
SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.9  
SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   7.7  
SB_11041| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  

>SB_7010| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 235 ILLCHQVKSERYANFALDENVLSHYGTNFEMERETI 342
           +L   ++  ER  +F LD+ +  HYGT FE++R+ +
Sbjct: 35  VLKDRKIAFERL-HFFLDDAIGCHYGTTFEVDRDKV 69


>SB_23059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 322 EMERETILFVVLCYFKINTL-VIICTVYLYIRNYIENKIF 438
           E+E   +LF++L +  IN L   +C V++Y   Y+ + +F
Sbjct: 237 ELEDFEVLFMILSFIVINNLSTFVCVVFIY---YLSSNVF 273


>SB_15664| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 356

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 239 YYVIKLKVSDTLI-LLLMKMF*AIMVQTLKWK 331
           Y++I L VSD L+ L+ M  +  I +   KW+
Sbjct: 67  YFIISLSVSDILVALIAMPFWFTIQISDNKWR 98


>SB_11041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 274 NFALDENVLSHYGTNFEMERETIL 345
           NFA+  N ++ Y TNF ++++ IL
Sbjct: 12  NFAMHSNRMTFYRTNFAIQQDVIL 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,517,663
Number of Sequences: 59808
Number of extensions: 202020
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)