Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10447X
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...    85   3e-18
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...    85   3e-18
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    25   5.0  
SPBC29A3.02c |his7||phosphoribosyl-AMP cyclohydrolase/phosphorib...    25   5.0  
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    24   8.8  
SPBC19C2.11c |||mitochondrial outer membrane protein |Schizosacc...    24   8.8  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = +1

Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
           +LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE            APGGHLG
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLG 247



 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 22/54 (40%), Positives = 25/54 (46%)
 Frame = +3

Query: 3   APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 164
           APTK WR+WH                          ARGH IE+IPE+PLVV D
Sbjct: 103 APTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVVDD 156


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = +1

Query: 256 RLRAGKGKMRNRRRIQRKGPLIIFNKDQGLTRAFRNIPGVEXXXXXXXXXXXXAPGGHLG 435
           +LRAGKGK+RNRR +QR+GPL++FN+D G+ +AFRNIPGVE            APGGHLG
Sbjct: 188 KLRAGKGKLRNRRHVQRRGPLVVFNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLG 247



 Score = 44.4 bits (100), Expect = 8e-06
 Identities = 22/54 (40%), Positives = 25/54 (46%)
 Frame = +3

Query: 3   APTKPWRRWHXXXXXXXXXXXXXXXXXXXXXXXXXQARGHIIEKIPELPLVVAD 164
           APTK WR+WH                          ARGH IE+IPE+PLVV D
Sbjct: 103 APTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVVDD 156


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +1

Query: 7   PRSPGGVGTVASTSDSGERPWRQRLLLPASQRSFRLEDTLLKRFPSFPWL*RTSP 171
           PR+    G +     S E    +R  +PA +R +  E++L +R  S  W  R  P
Sbjct: 311 PRTRVVNGQIVLDETSLEVDRHERDFVPAEEREYVEENSLSRRVTSATWGNRQKP 365


>SPBC29A3.02c |his7||phosphoribosyl-AMP
           cyclohydrolase/phosphoribosyl-ATP pyrophosphohydrolase
           His7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 211 PQEDDSLFGLVDLLDLSATTRGSSGIFSIM 122
           P E+     L DL+ +SA T    G+FS +
Sbjct: 186 PAEEPKKLSLADLILISANTDREDGLFSTL 215


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 123 IIEKIPELPLVVADKSRRSTRPNRLSS 203
           I+EK+P+ P + A++  +  R  R ++
Sbjct: 98  IVEKVPDAPPIKAERKTKRPRARRAAN 124


>SPBC19C2.11c |||mitochondrial outer membrane protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +1

Query: 316 LIIFNKDQGLTRAFRNIP 369
           +++F+K +G+T  FRN P
Sbjct: 134 VLVFSKQKGITVVFRNDP 151


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,606,635
Number of Sequences: 5004
Number of extensions: 28834
Number of successful extensions: 81
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)