Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10446
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 137 1e-33
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 137 1e-33
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 101 1e-22
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 90 3e-19
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 7e-05
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 29 0.75
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 28 1.3
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 27 2.3
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 27 2.3
SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 26 5.3
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 26 5.3
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 26 7.0
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 9.2
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 9.2
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 9.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 137 bits (332), Expect = 1e-33
Identities = 65/101 (64%), Positives = 73/101 (72%)
Frame = +3
Query: 3 CFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLH 182
CFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RFNI DV LH
Sbjct: 635 CFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLH 694
Query: 183 TDAIHRGGGQIIPTTRRCLYACLLLLSPVSWSLYIFVKFSV 305
DAIHRGGGQIIPT RR +YA LL SP+ V+ V
Sbjct: 695 ADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQV 735
Score = 125 bits (302), Expect = 6e-30
Identities = 55/91 (60%), Positives = 68/91 (74%)
Frame = +2
Query: 230 KMLVCMSATAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA 409
+++ + A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KA
Sbjct: 711 RVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKA 770
Query: 410 YLPVNESFGFTADLRSNTGGQAFPQCVFDHW 502
YLPVNESFGFT +LR T GQAFPQ VFDHW
Sbjct: 771 YLPVNESFGFTGELRQATAGQAFPQLVFDHW 801
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 508 LPGEPCEPQSKPYNVVQETRKRKGLKEGLP 597
+ G+P +P SKP +V E RKRKGLKE +P
Sbjct: 804 MSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 137 bits (332), Expect = 1e-33
Identities = 65/101 (64%), Positives = 73/101 (72%)
Frame = +3
Query: 3 CFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDVTLH 182
CFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR RFNI DV LH
Sbjct: 635 CFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSCRFNILDVVLH 694
Query: 183 TDAIHRGGGQIIPTTRRCLYACLLLLSPVSWSLYIFVKFSV 305
DAIHRGGGQIIPT RR +YA LL SP+ V+ V
Sbjct: 695 ADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQV 735
Score = 125 bits (302), Expect = 6e-30
Identities = 55/91 (60%), Positives = 68/91 (74%)
Frame = +2
Query: 230 KMLVCMSATAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKA 409
+++ + A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KA
Sbjct: 711 RVVYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKA 770
Query: 410 YLPVNESFGFTADLRSNTGGQAFPQCVFDHW 502
YLPVNESFGFT +LR T GQAFPQ VFDHW
Sbjct: 771 YLPVNESFGFTGELRQATAGQAFPQLVFDHW 801
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +1
Query: 508 LPGEPCEPQSKPYNVVQETRKRKGLKEGLP 597
+ G+P +P SKP +V E RKRKGLKE +P
Sbjct: 804 MSGDPLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 101 bits (242), Expect = 1e-22
Identities = 48/92 (52%), Positives = 64/92 (69%), Gaps = 2/92 (2%)
Frame = +2
Query: 239 VCMSA--TAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAY 412
VC S+ TA PRLMEPVY+ E+ P ++ IY +L RRRGHV ++ G+P+++V+A
Sbjct: 828 VCYSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRAL 887
Query: 413 LPVNESFGFTADLRSNTGGQAFPQCVFDHWQV 508
+PV +S GF DLR +T GQA Q VFDHWQV
Sbjct: 888 IPVIDSCGFETDLRVHTQGQAMCQMVFDHWQV 919
Score = 83.4 bits (197), Expect = 3e-17
Identities = 40/91 (43%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Frame = +3
Query: 6 FGPEGTGPNILVDCSKGVQY----LNEIKDSVVAGFQWAAKEGVMAEENLRGVRFNIYDV 173
FGP+ G NIL D + LN +K+ + GFQW +EG + +E +R V F + DV
Sbjct: 748 FGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDETIRNVNFRLMDV 807
Query: 174 TLHTDAIHRGGGQIIPTTRRCLYACLLLLSP 266
L + I+RGGGQIIPT RR Y+ L SP
Sbjct: 808 VLAPEQIYRGGGQIIPTARRVCYSSFLTASP 838
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 90.2 bits (214), Expect = 3e-19
Identities = 39/86 (45%), Positives = 56/86 (65%)
Frame = +2
Query: 263 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 442
PRLM +Y C++Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF
Sbjct: 860 PRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFA 919
Query: 443 ADLRSNTGGQAFPQCVFDHWQVSLEN 520
++ T G A+PQ +F +++ EN
Sbjct: 920 VEILKRTSGAAYPQLIFHGFEMLDEN 945
Score = 29.5 bits (63), Expect = 0.57
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Frame = +3
Query: 6 FGPEGTGPNILVDCSKGVQYL-----------NEIKDSVVAGFQWAAKEGVMAEENLRGV 152
FGP+ GPNIL D +K ++ +++ + VV FQ +G + E ++G+
Sbjct: 754 FGPKRVGPNILFDKTKKMRDFRRQSDETKLIPSDLSEYVVTAFQLITHQGPLCAEPVQGI 813
Query: 153 RFNIYDVTLHTDA 191
+I + D+
Sbjct: 814 CVSIDQFDISDDS 826
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 42.3 bits (95), Expect = 7e-05
Identities = 20/72 (27%), Positives = 39/72 (54%)
Frame = +2
Query: 257 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 436
A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N F
Sbjct: 670 ANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFS 727
Query: 437 FTADLRSNTGGQ 472
+++D+R+ T G+
Sbjct: 728 YSSDIRALTKGK 739
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 29.1 bits (62), Expect = 0.75
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +3
Query: 456 PTPADRPSRSAYSTIGRSPWRTVRT-SEQALQRCTGN 563
P P RPS + Y ++ W +T ++Q QR TG+
Sbjct: 837 PVPPSRPSANPYLLYQKTQWHVCKTLADQDKQRVTGD 873
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 438 LLPICVPTPADRPSRSAYSTIGRSPWRTVRTSEQALQR 551
+LP+ + TPA P + YS G S + V + LQ+
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVCVKRKILQQ 146
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 226 VVGMIWPPPLWMASVWSVTS*MLNRTPRKFSSAITPSLAA 107
V G+ PPPL + S+ + + + + FS A+ PSL A
Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344
>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 202 PLWMASVWSVTS*MLNRTPRKFSSAITPSLAAHWNPATTESLISLRY 62
P W+A V ++ S + P FSS + +L A+ N + + + Y
Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89
>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 299 EFHKDIQAP*DGAEQ*QTCIQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 138
E K IQ GA Q + CW++L+TTS + + II + TT I
Sbjct: 187 ELAKQIQETSLGATT-QEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 209 PNHSNN*KMLVCMSATAQPRLMEPVYLCEIQC---PEVAVGGI 328
P+H+N + + +S + RLMEP EIQC P+ A+G I
Sbjct: 469 PSHANEDMVRLRISRNGEERLMEP--KDEIQCLNLPKSALGTI 509
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/79 (21%), Positives = 34/79 (43%)
Frame = +2
Query: 203 WWPNHSNN*KMLVCMSATAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 382
W+P + + +S A + + + E E + ++ LNR++ + F Q+
Sbjct: 234 WFPKMETSLTLDELLSLFASSKELTSLVPNEKNPKEYILKLLFDHLNRKKTNNFNTHQIL 293
Query: 383 GTPMFIVKAYLPVNESFGF 439
++ A L V +FGF
Sbjct: 294 SQSDVVLNALLSVATAFGF 312
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 9.2
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Frame = -1
Query: 242 IQASSSCWND-----LAT--TSMDGISMECYIIDVESNTTQILFSHNSFLSGPLESSHNR 84
+Q S S +ND LA ++ + + Y++ E + Q + SFL L S HN+
Sbjct: 203 LQHSDSSFNDKFLLLLANIPVTVSNVEVLLYLLQQEESLAQFDLNGKSFLYHMLVSLHNQ 262
Query: 83 VLN 75
V N
Sbjct: 263 VTN 265
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +2
Query: 392 MFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVSLENRANLRASP 544
+F+ ++ + T D SN+ + ++D ++VSLE+ A L P
Sbjct: 654 LFVDAGFISITSQNVETNDKESNSESETLYHLIYDRYRVSLES-ARLLLGP 703
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1317
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 63 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 155
YL+ + +AGFQ G+ ++N +GVR
Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,370,594
Number of Sequences: 5004
Number of extensions: 73934
Number of successful extensions: 202
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -