Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10445
         (486 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch...    25   4.6  
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ...    25   4.6  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    25   6.1  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   6.1  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   6.1  
SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomy...    25   8.0  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    25   8.0  
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    25   8.0  
SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2 |Schizosacc...    25   8.0  

>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
           cytochrome c oxidase assembly protein Cox1101,
           mitochondrial ribosomal protein
           Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +3

Query: 84  DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 209
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
           cytochrome c oxidase assembly protein Cox1102,
           mitochondrial ribosomal protein
           Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 753

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +3

Query: 84  DVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYK 209
           D+  +L ++  L ++AP  +   +T    +V+  +    PY+
Sbjct: 111 DIKKDLATESQLPLSAPFKDESTRTMTDPQVLAYIHQSMPYQ 152


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = -2

Query: 239 YCRLFYRFVLLVRSASLDNRYNALCIFRFINIFADRRRHDEVSIGSQLSRNISSTRVHR 63
           Y  L + F+  + SA + N       F F   +A+    +E+S  + +  N  STR+ R
Sbjct: 7   YFVLIFLFLKGINSAYVSNEEGETVDFTFSGFYANLTYPNEISELNYVEGNYLSTRIVR 65


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +1

Query: 259 DSGAEDISS--SGSDCSTGTRGEERTDHALR 345
           DSG  D     SG+D S    GEE++  AL+
Sbjct: 797 DSGTNDFDKLISGNDVSKNNSGEEQSRSALK 827


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +3

Query: 60  LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVET 194
           LP  S++   +  + + G   ++ PI+  V  T  +   +PI  T
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPT 266


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -3

Query: 196 PVSTIGTTRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAAL 74
           P  +  TT S+ +  +T   +  V TRY  + S+ VTS+++
Sbjct: 451 PTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSI 491


>SPAC607.09c |btn1||battenin CLN3 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 396

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 14/50 (28%), Positives = 23/50 (46%)
 Frame = +3

Query: 36  SQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPI 185
           S  +H+ SLP  SS   +     +  YLV+T   + +V  T      +P+
Sbjct: 121 SSRYHSVSLPCWSSGTGLAGLFGASSYLVMTTWFNFSVRSTLIISSFLPL 170


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 247 WTFYDSGAEDISSSGSDCSTGTRGEER--TDHALRTR*SDRKRQRDPTR 387
           W  YD  +++  SS +DCS   +  E    +H  R   S RKR   P +
Sbjct: 104 WEGYDDPSDNTWSSEADCSGCKQLIEAYWNEHGGRPEPSKRKRTARPKK 152


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 259 DSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRD 378
           D+G+ED+ S  +     T   E++  +LR    ++KR+ D
Sbjct: 473 DNGSEDLGSIENKTVEDTGNREKSKKSLRKDIREKKRKID 512


>SPBC887.11 |pus2||tRNA pseudouridylate synthase Pus2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 361 RKRQRDPTRKRSFCLSDNLVYAFNDI 438
           +K Q++ +RK    L  NLVY+ ND+
Sbjct: 177 KKMQKNLSRKLDNELERNLVYSMNDL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,597,343
Number of Sequences: 5004
Number of extensions: 26511
Number of successful extensions: 76
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)