Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10445
         (486 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    23   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.2  

>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 134 DQRKC**NEKYRARCTYCR 190
           +++ C  +++ R RC YCR
Sbjct: 148 EEKSCIIDKRQRNRCQYCR 166


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 134 DQRKC**NEKYRARCTYCR 190
           +++ C  +++ R RC YCR
Sbjct: 148 EEKSCIIDKRQRNRCQYCR 166


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 108 DGYLVVTAPISENVDKTKNT 167
           +G + +   I++N+D  KNT
Sbjct: 408 NGSMEINQNIAQNIDHAKNT 427


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 196 PVSTIGTTRSVFFVLSTFSLIGAV 125
           P  T+    S+ FV+S F   GA+
Sbjct: 51  PSITLIVLGSIIFVISFFGCCGAI 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,514
Number of Sequences: 438
Number of extensions: 1536
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)