Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10445
         (486 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34320.1 68414.m04259 expressed protein contains Pfam domain ...    32   0.24 
At5g53800.1 68418.m06685 expressed protein                             31   0.41 
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    29   1.7  
At2g04900.1 68415.m00509 expressed protein                             29   1.7  
At1g64550.1 68414.m07317 ABC transporter family protein similar ...    28   2.9  
At5g24740.1 68418.m02920 expressed protein                             28   3.8  
At3g07090.1 68416.m00843 expressed protein                             28   3.8  
At1g04140.2 68414.m00404 transducin family protein / WD-40 repea...    28   3.8  
At1g04140.1 68414.m00403 transducin family protein / WD-40 repea...    28   3.8  
At5g47400.1 68418.m05841 hypothetical protein                          27   8.9  
At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related...    27   8.9  

>At1g34320.1 68414.m04259 expressed protein contains Pfam domain
           PF05003: protein of unknown function (DUF668)
          Length = 657

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +3

Query: 42  FFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTER--VVPIVETGA 200
           F H     +N++A+D+ +     G     +P++ENVD  K+T      PIV +G+
Sbjct: 19  FAHVNGHHLNNNASDLNSHSGESGLKDDPSPVTENVDDNKHTSESFSFPIVSSGS 73


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +1

Query: 259 DSGAEDISSSGSDCSTGTRGEERTDHALRTR*SDRKRQRDPTRKRSFCLSDN 414
           DSG+E    SGS+     R   R D   R   SDRK  R   R+R +  S +
Sbjct: 59  DSGSESGLESGSESEKEERRRSRKDRGKRK--SDRKSSRSRRRRRDYSSSSS 108


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +3

Query: 21  HDVFASQFFHTYSLP-VNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETG 197
           H +F+     T S P V  S A ++ EL        T  + E+ D+  ++E V P+ +  
Sbjct: 244 HPIFSKHDALTLSTPQVLESRALLSHELLRKRNKD-TVVVPESSDRGADSENVEPLFQPT 302

Query: 198 APYKKDEP--VEKTTVETL 248
            P  K EP  V+  TVET+
Sbjct: 303 NPSPKSEPEPVKTITVETI 321


>At2g04900.1 68415.m00509 expressed protein
          Length = 128

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = -3

Query: 175 TRSVFFVLSTFSLIGAVTTRYPSEVSSAVTSAALEFTG 62
           T S++ ++ T +L+ A +T+YP+     +T+  + F+G
Sbjct: 58  TASLYHLVHTAALVSAPSTKYPNIFGGLLTAGIVAFSG 95


>At1g64550.1 68414.m07317 ABC transporter family protein similar to
           ABC transporter protein GB:AAF31030 GI:6899653 from
           [Leishmania major]
          Length = 715

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
 Frame = +3

Query: 60  LPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIV----ETGAPYKKDEPVE 227
           +P N     V  E+  D    +   ++ ++++TK  E  + I+    ET  P  KD    
Sbjct: 228 IPTNCQILHVEQEVVGDKTTALQCVLNTDIERTKLLEEEIQILAKQRETEEPTAKDGMPT 287

Query: 228 KTTVE 242
           K TVE
Sbjct: 288 KDTVE 292


>At5g24740.1 68418.m02920 expressed protein
          Length = 3306

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
 Frame = -2

Query: 395  LRFRVGSRCLFLSLHRVRRAWSVLSSPRVPVLQS-----LPLELMSSAPES*NVQGFYCR 231
            ++FR+    L   LHR+R+A   L S   PVLQ+        EL ++ P S +VQ F   
Sbjct: 1266 IKFRIFVNLLTSKLHRLRKAPGTLLSE--PVLQADMKFVCSGELKNNFPMSLDVQFFKIG 1323

Query: 230  LF--YRFVLLVRSASLDNRYNAL 168
            L+     V+L R  + D   +AL
Sbjct: 1324 LYSLLSSVMLARCINADGDPSAL 1346


>At3g07090.1 68416.m00843 expressed protein
          Length = 265

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +3

Query: 108 DGYLVVTAPISENVDKTKNTERVVPIVETGAPYK--KDEPV 224
           DG  +V AP  E  + +  TE+V P+++  A  +  KD+P+
Sbjct: 177 DGPQIVIAPKLEAAETSTATEKVPPVIQPSASKEKVKDDPL 217


>At1g04140.2 68414.m00404 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 793

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 127 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 41
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At1g04140.1 68414.m00403 transducin family protein / WD-40 repeat
           family protein contains 4 WD-40 repeats (PF00400);
           similar to neural cell adhesion molecule 2, large
           isoform precursor gb|M76710 from Xenopus laevis, and
           beta transducin from S. cerevisiae gb|Q05946. ESTs
           gb|N65081 gb|Z30910, gb|Z34190, gb|Z34611, gb|R30101,
           gb|H36304, and gb|N65606 come from
          Length = 790

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 127 VTTRYPSEVSSAVTSAALEFTGRL*VWKN 41
           V  R PSE++S++ +A L  T +L VW +
Sbjct: 536 VVNRIPSELASSIAAAELPCTVKLRVWSH 564


>At5g47400.1 68418.m05841 hypothetical protein 
          Length = 665

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +3

Query: 30  FASQFFHTYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVP 182
           FA +F HT    +   A  V + LTS   L+V   + +N+DK  ++++  P
Sbjct: 553 FAHKFLHTDPEIITQMALKVMSTLTSSKELLV---LMKNIDKAFHSKQTGP 600


>At3g23670.1 68416.m02976 phragmoplast-associated kinesin-related
           protein, putative similar to kinesin like protein
           GB:CAB10194 from [Arabidopsis thaliana]
          Length = 1313

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 431 LNAYTKLSLKQKLRFRVGSRCLFLSLHR 348
           LN Y+ LS K+   F V +R L  SLHR
Sbjct: 733 LNLYSALSTKKSEAFPVPTRQLAASLHR 760


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,210,197
Number of Sequences: 28952
Number of extensions: 133094
Number of successful extensions: 419
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 419
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)