Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10444X
         (417 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    71   5e-14
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |...    26   2.7  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    25   6.2  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         25   6.2  

>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 71.3 bits (167), Expect = 5e-14
 Identities = 32/82 (39%), Positives = 49/82 (59%)
 Frame = +3

Query: 3   QHHIYYIAGSSRAEVEKSPFAERLVXRGYEVLYLTEAVDEXCISSXHEYEGHKFQNIAKE 182
           Q +IY+I G S+  VE SPF E    + ++VL++ + +DE  ++   E+EG K  NI K+
Sbjct: 463 QKNIYFITGESKQAVENSPFLEIFRAKKFDVLFMVDPIDEYAVTQLKEFEGKKLVNITKD 522

Query: 183 IFDLEEGDRAKEKLEAYKKQYE 248
             +LEE D  K   E  +K+YE
Sbjct: 523 GLELEETDEEKAAREKLEKEYE 544



 Score = 24.6 bits (51), Expect = 6.2
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = +2

Query: 230 LQEAVRXAARWLGDKLGSWITRTTV*QRXXXXXXXXXXXXFGWTGNMERLALSNA 394
           L++     A+ L   LG  + +  V  +            +GW+ NMER+  + A
Sbjct: 539 LEKEYEEFAKQLKTILGDKVEKVVVSNKIVGSPCLLTTGQYGWSANMERIMKAQA 593


>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 195 EEGDRAKEKLEAYKKQYEXLRAGW 266
           EE  +AKEKLE +KK+    R  +
Sbjct: 72  EEDSQAKEKLEEFKKRCSYYRGSY 95


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 285 QLPSLSPSQRAAXRTASCRPPASPWRGRLP 196
           Q PS  P+  A  + +  +P AS W   +P
Sbjct: 111 QFPSREPASTAINKLSDLQPMASIWENIVP 140


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 257 RWLGDKLGSWITRTT 301
           RWLG +LG W+   T
Sbjct: 295 RWLGKRLGEWLLDIT 309


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,205,984
Number of Sequences: 5004
Number of extensions: 16018
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)