Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10443
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    69   5e-13
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo...    40   3e-04
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    40   3e-04
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats...    39   7e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    38   0.001
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    33   0.044
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c...    32   0.077
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    29   0.54 
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    27   3.8  
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha...    27   3.8  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    26   6.7  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   8.9  

>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 36/84 (42%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
 Frame = +1

Query: 7   YFGFYDTARGM-LPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDI 183
           YFG YDT + + L  P     + S+ +   VTT +G+ SYP DT+RRRMMM SG A   +
Sbjct: 212 YFGMYDTLKPVVLVGPLEGNFLASFLLGWAVTTGSGVASYPLDTIRRRMMMTSGEA---V 268

Query: 184 LYKNTIHCWATIAKTEGTSAFFKG 255
            Y ++  C   I   EG  +FFKG
Sbjct: 269 KYSSSFECGRQILAKEGARSFFKG 292



 Score = 32.3 bits (70), Expect = 0.077
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = +3

Query: 231 GNLGLLQGAFSNVLRGTGGAFVLVLYDEIKKVL 329
           G     +GA +N+LRG  GA VL +YD+++ ++
Sbjct: 285 GARSFFKGAGANILRGVAGAGVLSIYDQVQLLM 317


>SPAC19G12.05 |||mitochondrial citrate
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 24/94 (25%), Positives = 43/94 (45%)
 Frame = +1

Query: 4   SYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDI 183
           +Y     + +  LP  +    V ++ +      +    + P DTV+ RM  QS  A  + 
Sbjct: 183 AYNSIKQSLQSRLPPDEKLSTVTTFLVGSVAGIITVYCTQPIDTVKSRM--QSLSASKE- 239

Query: 184 LYKNTIHCWATIAKTEGTSAFFKGPSPTSSEVLV 285
            YKN+IHC   I   +G   F+ G +P  + +++
Sbjct: 240 -YKNSIHCAYKILTQDGLLRFWSGATPRLARLIL 272


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 22/83 (26%), Positives = 41/83 (49%)
 Frame = +1

Query: 1   ASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSD 180
           A YF   +  +  +    + P+  + A A  +T ++     PFD +++RM + S +    
Sbjct: 93  AIYFSVLEFFKSKINASPDRPLASALAGACAIT-ISDAFMTPFDVIKQRMQLPSRK---- 147

Query: 181 ILYKNTIHCWATIAKTEGTSAFF 249
             YK+ +HC  T+ + EG  AF+
Sbjct: 148 --YKSALHCATTVFRNEGLGAFY 168


>SPAC4G9.20c |||mitochondrial carrier with solute carrier
           repeats|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 39.1 bits (87), Expect = 7e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 112 IISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 255
           ++  PFD V+ R+  QS  +    +Y N + C   I+K EG +AF+KG
Sbjct: 33  LVGQPFDCVKVRLQSQSNVSP---IYNNALDCVKKISKNEGLAAFYKG 77



 Score = 30.7 bits (66), Expect = 0.24
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 124 PFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGPSPTSS 273
           P + VR R+ +Q+G+   ++LY     C   I+   G S   KG +PT++
Sbjct: 132 PVEHVRIRLQIQTGK---NVLYHGPWDCIKKISSQYGLSGIMKGYNPTAA 178


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +1

Query: 55  NTPIVISWAIAQTVTTVAGIIS-YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTE 231
           N P  +++A A  V  ++ +++ YP D V+ RM +  G  KSD  Y  T  C   I K E
Sbjct: 5   NIPFPVTFA-AGAVAGISEVLTLYPLDVVKTRMQLSVG--KSD--YNGTFDCLKKIVKNE 59

Query: 232 GTSAFFKGPSP 264
           G    ++G  P
Sbjct: 60  GPHRLYRGILP 70



 Score = 33.9 bits (74), Expect = 0.025
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
 Frame = +1

Query: 1   ASYFGFYDTARGML-PDPKNTPIVISWAIAQTVTTVAG-IISYPFDTVRRRMMMQSGRAK 174
           A YFG     R  L P       + +  IA T+  + G  +S PFD ++ R+      A 
Sbjct: 176 AGYFGVIQKIRNSLTPASSRIGEIRNNLIAGTIGGIFGTFLSTPFDVIKSRIQTVPRIAG 235

Query: 175 SDILYKNTIHCWATIAKTEGTSAFFKGPSP 264
               Y        T+A+ EG +A +KG  P
Sbjct: 236 QVPKYNWAYPALVTVAREEGFTALYKGFVP 265


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 33.1 bits (72), Expect = 0.044
 Identities = 21/92 (22%), Positives = 35/92 (38%)
 Frame = +1

Query: 4   SYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSDI 183
           ++ G   +   + P     P  +  A      +    I +P + +R R+  Q G +    
Sbjct: 315 TWIGILASRDNVDPQDVKLPNGLVMAFGALSGSTGATIVFPLNVIRTRLQTQ-GTSAHPA 373

Query: 184 LYKNTIHCWATIAKTEGTSAFFKGPSPTSSEV 279
            Y   I C+    K EG    +KG SP   +V
Sbjct: 374 TYDGFIDCFYKTTKNEGFRGLYKGLSPNLLKV 405


>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 32.3 bits (70), Expect = 0.077
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = +1

Query: 127 FDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 255
           FDTV  RM  Q    K+  LYKN I C     ++EG  A +KG
Sbjct: 250 FDTVMTRMYNQ----KNKELYKNPIDCILKTIRSEGFFALYKG 288


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 18/58 (31%), Positives = 28/58 (48%)
 Frame = +1

Query: 115 ISYPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKGPSPTSSEVLVV 288
           +++P D +RRR  +          YKN       I KTEG + FF+G S    +++ V
Sbjct: 243 LTFPADVLRRRFQVNRIPGIGHN-YKNIKSAIFHIYKTEGINGFFRGYSSNMLKIIPV 299


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 187 YKNTIHCWATIAKTEGTSAFFKGPSPT 267
           Y NT   +  I K EG +AF++G  P+
Sbjct: 230 YNNTFDAFRKIYKYEGLAAFYRGLFPS 256


>SPAC17H9.08 |||mitochondrial coenzyme A
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +1

Query: 115 ISYPFDTVRRRMMMQSGRA-KSDILYKNTIHCWATIAKTEGTSAFFKG 255
           +SYPF+  RR+M +   R  KS +  K  +    T  K  G   FF G
Sbjct: 253 VSYPFEVCRRKMQIGGIRKNKSFLRLKQVVQ---TTYKEAGMRGFFVG 297


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 34  GMLPDPKNTPIVISWAIAQTVTTV 105
           GMLPDPK+ P++        +T V
Sbjct: 89  GMLPDPKSIPVISQALTKYKITDV 112


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 237 LGLLQGAFSNVLRGTGGAF 293
           LGL+ G F N +RG+G A+
Sbjct: 846 LGLMDGPFWNTIRGSGLAY 864


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +3

Query: 147 HDDAVWSCQERYPV----QEHHPLLGYHCQDRGNLGLLQGAFSNVLR 275
           H + + S +  Y +    ++ +  +   C  +GNL L  GAF N ++
Sbjct: 278 HSETIQSLESHYKLNQVGEKEYSTISDLCFSKGNLFLYTGAFDNAVK 324


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,413
Number of Sequences: 5004
Number of extensions: 57420
Number of successful extensions: 148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)