Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10443
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   163   2e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   163   2e-42
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  163 bits (395), Expect = 2e-42
 Identities = 72/85 (84%), Positives = 79/85 (92%)
 Frame = +1

Query: 1   ASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSD 180
           A+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+
Sbjct: 191 AAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSE 250

Query: 181 ILYKNTIHCWATIAKTEGTSAFFKG 255
           ILYK+T+HCWATI KTEG +AFFKG
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 51.2 bits (117), Expect = 1e-08
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +3

Query: 231 GNLGLLQGAFSNVLRGTGGAFVLVLYDEIKKVL 329
           G     +GAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 268 GGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 121 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 255
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 25.4 bits (53), Expect = 0.58
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 79  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 252
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 253 G 255
           G
Sbjct: 75  G 75


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  163 bits (395), Expect = 2e-42
 Identities = 72/85 (84%), Positives = 79/85 (92%)
 Frame = +1

Query: 1   ASYFGFYDTARGMLPDPKNTPIVISWAIAQTVTTVAGIISYPFDTVRRRMMMQSGRAKSD 180
           A+YFGFYDTARGMLPDPK TP +ISW IAQ VTTVAGI+SYPFDTVRRRMMMQSGRAKS+
Sbjct: 191 AAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSE 250

Query: 181 ILYKNTIHCWATIAKTEGTSAFFKG 255
           ILYK+T+HCWATI KTEG +AFFKG
Sbjct: 251 ILYKSTLHCWATIYKTEGGNAFFKG 275



 Score = 51.2 bits (117), Expect = 1e-08
 Identities = 23/33 (69%), Positives = 26/33 (78%)
 Frame = +3

Query: 231 GNLGLLQGAFSNVLRGTGGAFVLVLYDEIKKVL 329
           G     +GAFSN+LRGTGGA VLVLYDEIK +L
Sbjct: 268 GGNAFFKGAFSNILRGTGGALVLVLYDEIKNLL 300



 Score = 28.7 bits (61), Expect = 0.063
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 121 YPFDTVRRRMMMQSGRAKSDILYKNTIHCWATIAKTEGTSAFFKG 255
           YP D  R R+    G+A  +  +    +C   I K +G +  ++G
Sbjct: 134 YPLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRG 178



 Score = 25.4 bits (53), Expect = 0.58
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 79  AIAQTVTTVAGIISYPFDTVRRRMMMQ--SGRAKSDILYKNTIHCWATIAKTEGTSAFFK 252
           A A + TTVA     P + V+  + +Q  S +   +  YK  I C+  I K +G  ++++
Sbjct: 20  AAAISKTTVA-----PIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWR 74

Query: 253 G 255
           G
Sbjct: 75  G 75


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 319 LISSYKTSTKAPPVPLRTLEKAP 251
           L++++KT T+ P    + LEK P
Sbjct: 134 LVNAFKTLTQEPKNTNKFLEKGP 156


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 211 ATIAKTEGTSAFFKGPSPTSSEVLVV 288
           AT+ +T   SA FKG  P++   + V
Sbjct: 470 ATVIQTSELSATFKGLKPSTDYAIQV 495


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,110
Number of Sequences: 438
Number of extensions: 4120
Number of successful extensions: 19
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)