Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10442
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.46 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.80 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    22   4.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   7.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.46
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 130 ILSKKA*CALSSVEHFAMTLYTYCSFW 50
           +L++K   A +  +H   T+YT C  W
Sbjct: 835 VLTRKIPEAFNESKHIGFTMYTTCVIW 861


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 261 TLSNRHADCLSPLSQMSVLYKVSFVSVTLSNTIFAKLQDYC 383
           TLS +HA   + L  +S L  V       +  +F  L +YC
Sbjct: 286 TLSTQHAKSQASLPPVSYLKAVDAFMSVCTVFVFMALMEYC 326


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = -3

Query: 67  TYCSFWN 47
           TYC+FWN
Sbjct: 572 TYCAFWN 578


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = +2

Query: 131 LAIDHKNKENTAKIQRKNKTKQKSYILS 214
           + +  K K+N  +  R N T++  Y+L+
Sbjct: 351 MVVSMKIKQNVPQSGRVNNTQRNEYLLA 378


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 187 FIFSLDFCSVFFIFVINCQILSKKA*CALS 98
           ++F   FC  +  F + C   S    CA+S
Sbjct: 91  WVFGPRFCDTWIAFDVMCSTASILNLCAIS 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,625
Number of Sequences: 438
Number of extensions: 2650
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)