Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10441
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation facto...    68   7e-14
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    24   1.6  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   1.6  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    24   1.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   2.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.4  

>AY819656-1|AAV70656.1|   56|Tribolium castaneum elongation factor
           1-alpha protein.
          Length = 56

 Score = 68.1 bits (159), Expect = 7e-14
 Identities = 31/34 (91%), Positives = 32/34 (94%)
 Frame = +2

Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPG 610
           LKPG +VVFAPANITTEVKSVEMHHEAL EAVPG
Sbjct: 23  LKPGMVVVFAPANITTEVKSVEMHHEALPEAVPG 56



 Score = 49.2 bits (112), Expect = 4e-08
 Identities = 22/22 (100%), Positives = 22/22 (100%)
 Frame = +3

Query: 444 LQDVYKIGGIGTVPVGRVETGV 509
           LQDVYKIGGIGTVPVGRVETGV
Sbjct: 1   LQDVYKIGGIGTVPVGRVETGV 22


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 598 FLESFVVHLHRFDFSSDVG 542
           FLE  + H  RF FSS VG
Sbjct: 68  FLEMTLAHHCRFKFSSSVG 86


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 395 IESFNEAFSVSFAFFTLH 342
           I++FN+ F  SF  FTL+
Sbjct: 271 IDAFNDIFGWSFLLFTLY 288


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 395 IESFNEAFSVSFAFFTLH 342
           I++FN+ F  SF  FTL+
Sbjct: 197 IDAFNDIFGWSFLLFTLY 214


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -3

Query: 503 SFN-SADGHGTNTTDFVYVLQ 444
           SFN +A+GHG NT+   Y  Q
Sbjct: 283 SFNWTANGHGHNTSSHNYYAQ 303


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = -1

Query: 532  DNNGTWFQTPVSTLPTGTVPIPPILYTSCRGRRRGLSVGRAGGRMAS 392
            D +GT   T     P G++     ++ S  G   G ++  +GG+  S
Sbjct: 941  DRSGTPRSTNGDRKPGGSLGALSSMFDSLSGNNTGDALAPSGGKKGS 987


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,187
Number of Sequences: 336
Number of extensions: 4733
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)