Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10441
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 158 4e-39
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 158 4e-39
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 158 4e-39
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 127 8e-30
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 96 2e-20
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 93 2e-19
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 93 2e-19
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 49 3e-06
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 49 3e-06
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 46 4e-05
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 46 4e-05
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 46 4e-05
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.17
AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical ... 29 2.8
Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr... 28 6.6
U88315-18|ABO16437.1| 99|Caenorhabditis elegans Hypothetical p... 28 6.6
U88315-17|AAK68238.1| 132|Caenorhabditis elegans Hypothetical p... 28 6.6
U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical p... 28 6.6
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 28 6.6
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 28 6.6
U11280-4|AAM97951.2| 353|Caenorhabditis elegans Protein kinase ... 28 6.6
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele... 28 6.6
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 28 8.7
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 158 bits (384), Expect = 4e-39
Identities = 70/87 (80%), Positives = 78/87 (89%)
Frame = +3
Query: 249 PSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 428
P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 151 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 210
Query: 429 PLRLPLQDVYKIGGIGTVPVGRVETGV 509
PLRLPLQDVYKIGGIGTVPVGRVETG+
Sbjct: 211 PLRLPLQDVYKIGGIGTVPVGRVETGI 237
Score = 116 bits (280), Expect = 1e-26
Identities = 54/92 (58%), Positives = 63/92 (68%)
Frame = +2
Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 688
+KPG +V FAP N+TTEVKSVEMHHE+L EAVPGD ++RRG V DSK
Sbjct: 238 IKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQ 297
Query: 689 NPPKGAADFTAQVIVLNHPGQNLKRYTPVLDC 784
+P K A F AQVI++NHPGQ YTPVLDC
Sbjct: 298 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDC 329
Score = 64.1 bits (149), Expect(2) = 5e-15
Identities = 28/38 (73%), Positives = 31/38 (81%)
Frame = +1
Query: 139 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 252
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNP 151
Score = 34.7 bits (76), Expect(2) = 5e-15
Identities = 15/16 (93%), Positives = 16/16 (100%)
Frame = +1
Query: 1 MITGTSQADCAVLIVA 48
MITGTSQADCAVL+VA
Sbjct: 102 MITGTSQADCAVLVVA 117
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 158 bits (384), Expect = 4e-39
Identities = 70/87 (80%), Positives = 78/87 (89%)
Frame = +3
Query: 249 PSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 428
P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 429 PLRLPLQDVYKIGGIGTVPVGRVETGV 509
PLRLPLQDVYKIGGIGTVPVGRVETG+
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGI 271
Score = 150 bits (364), Expect = 1e-36
Identities = 72/84 (85%), Positives = 75/84 (89%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP
Sbjct: 102 MITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPP 161
Query: 181 YSEPRFEEIKKEVSSYIKKIGYNP 252
+SE RF EI EVS +IKKIGYNP
Sbjct: 162 FSEARFTEITNEVSGFIKKIGYNP 185
Score = 116 bits (280), Expect = 1e-26
Identities = 54/92 (58%), Positives = 63/92 (68%)
Frame = +2
Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 688
+KPG +V FAP N+TTEVKSVEMHHE+L EAVPGD ++RRG V DSK
Sbjct: 272 IKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQ 331
Query: 689 NPPKGAADFTAQVIVLNHPGQNLKRYTPVLDC 784
+P K A F AQVI++NHPGQ YTPVLDC
Sbjct: 332 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDC 363
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 158 bits (384), Expect = 4e-39
Identities = 70/87 (80%), Positives = 78/87 (89%)
Frame = +3
Query: 249 PSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 428
P AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+
Sbjct: 185 PKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDR 244
Query: 429 PLRLPLQDVYKIGGIGTVPVGRVETGV 509
PLRLPLQDVYKIGGIGTVPVGRVETG+
Sbjct: 245 PLRLPLQDVYKIGGIGTVPVGRVETGI 271
Score = 150 bits (364), Expect = 1e-36
Identities = 72/84 (85%), Positives = 75/84 (89%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP
Sbjct: 102 MITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPP 161
Query: 181 YSEPRFEEIKKEVSSYIKKIGYNP 252
+SE RF EI EVS +IKKIGYNP
Sbjct: 162 FSEARFTEITNEVSGFIKKIGYNP 185
Score = 116 bits (280), Expect = 1e-26
Identities = 54/92 (58%), Positives = 63/92 (68%)
Frame = +2
Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 688
+KPG +V FAP N+TTEVKSVEMHHE+L EAVPGD ++RRG V DSK
Sbjct: 272 IKPGMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQ 331
Query: 689 NPPKGAADFTAQVIVLNHPGQNLKRYTPVLDC 784
+P K A F AQVI++NHPGQ YTPVLDC
Sbjct: 332 DPAKEARTFHAQVIIMNHPGQISNGYTPVLDC 363
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 127 bits (307), Expect = 8e-30
Identities = 82/167 (49%), Positives = 96/167 (57%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MITGTSQADCAVL+VA GTGEFEAGISKNGQTREHALLA TLGVKQL V+ T P
Sbjct: 102 MITGTSQADCAVLVVACGTGEFEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSP 158
Query: 181 YSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVKKA 360
S R + I++ + + +P D TETTC C GSRDG + +K
Sbjct: 159 DSSRRSDTIQR-----LFHLSQSP---------DSTETTCLRSPRTCHGSRDGLLNARKE 204
Query: 361 KLTENASLKLSMPSCHLPAPLTSPCVFPCKTYTKSVVLVPCPSAELK 501
L E S +L PS H A LT VF + T+S L P S L+
Sbjct: 205 TLPERPSSRLLTPSSHHNAQLTDHSVFHSRMCTRSEELEPSQSDVLR 251
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 96.3 bits (229), Expect = 2e-20
Identities = 41/89 (46%), Positives = 63/89 (70%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MI G +QAD AVL+++A GEFE G + GQTREH++L T GVK L++ VNKMD
Sbjct: 204 MIVGANQADLAVLVISARRGEFETGFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVK 263
Query: 181 YSEPRFEEIKKEVSSYIKKIGYNPALSLS 267
+ E RF+EI+ +++ +++K+G+NP ++
Sbjct: 264 WEEERFKEIEGKLTPFLRKLGFNPKTDIT 292
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 369 GKCLIEALDAILPP-ARPTDKPLRLPLQDVYKIGGIGTVPVGRVETG 506
G C IE +D +LP R + P+R + + Y +GTV +G++E+G
Sbjct: 318 GPCFIEFIDVLLPSYKRDFNGPVRCTVAEKY--SEMGTVIIGKMESG 362
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/79 (56%), Positives = 59/79 (74%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ +
Sbjct: 265 MITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD-- 322
Query: 181 YSEPRFEEIKKEVSSYIKK 237
+S+ RF+EIK +S ++ +
Sbjct: 323 WSQDRFDEIKNNLSVFLTR 341
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = +3
Query: 264 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 443
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 350 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 396
Query: 444 LQDVYKIGGIGTVPVGRVETG 506
+ DV K+ V G++E+G
Sbjct: 397 ISDVLKVASNQLVVSGKIESG 417
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 93.1 bits (221), Expect = 2e-19
Identities = 45/79 (56%), Positives = 59/79 (74%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MITGTSQAD A+L+V A TGEFE G GQT+EHALL +LGV QLIV VNK+D+ +
Sbjct: 283 MITGTSQADAAILVVNATTGEFETGFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD-- 340
Query: 181 YSEPRFEEIKKEVSSYIKK 237
+S+ RF+EIK +S ++ +
Sbjct: 341 WSQDRFDEIKNNLSVFLTR 359
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = +3
Query: 264 FVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLP 443
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D PLR+
Sbjct: 368 FVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDGPLRIG 414
Query: 444 LQDVYKIGGIGTVPVGRVETG 506
+ DV K+ V G++E+G
Sbjct: 415 ISDVLKVASNQLVVSGKIESG 435
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/83 (37%), Positives = 44/83 (53%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MI GTSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E
Sbjct: 125 MICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE-- 175
Query: 181 YSEPRFEEIKKEVSSYIKKIGYN 249
E + ++ E + G+N
Sbjct: 176 --EDDLDLVEMEARELLSLHGFN 196
Score = 33.9 bits (74), Expect = 0.13
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +3
Query: 237 DWLQPSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC---LIEALDAILP 407
D ++ A + + G++GD P +G + EG+ D C LI+ALD++
Sbjct: 180 DLVEMEARELLSLHGFNGD-------ATPVIRGSALSALEGQ-DISCIERLIDALDSLPE 231
Query: 408 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 509
P R +P+ I G GTV VG +E GV
Sbjct: 232 PDRNEKDTFVMPIASKTAITGRGTVIVGTLERGV 265
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 49.2 bits (112), Expect = 3e-06
Identities = 31/83 (37%), Positives = 44/83 (53%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
MI GTSQ D AVL++AA G E QT+EH +LA +GVK + + +NK D E
Sbjct: 125 MICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAIFINKADLVE-- 175
Query: 181 YSEPRFEEIKKEVSSYIKKIGYN 249
E + ++ E + G+N
Sbjct: 176 --EDDLDLVEMEARELLSLHGFN 196
Score = 33.9 bits (74), Expect = 0.13
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Frame = +3
Query: 237 DWLQPSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC---LIEALDAILP 407
D ++ A + + G++GD P +G + EG+ D C LI+ALD++
Sbjct: 180 DLVEMEARELLSLHGFNGD-------ATPVIRGSALSALEGQ-DISCIERLIDALDSLPE 231
Query: 408 PARPTDKPLRLPLQDVYKIGGIGTVPVGRVETGV 509
P R +P+ I G GTV VG +E GV
Sbjct: 232 PDRNEKDTFVMPIASKTAITGRGTVIVGTLERGV 265
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 45.6 bits (103), Expect = 4e-05
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTE 174
MITG +Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E
Sbjct: 129 MITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--E 179
Query: 175 PPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGT 288
P +E R E ++ ++ + + GY +CP + G+
Sbjct: 180 VPDAETR-ELVEMDIREQLNEFGYP---GDTCPVIFGS 213
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 45.6 bits (103), Expect = 4e-05
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTE 174
MITG +Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E
Sbjct: 130 MITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--E 180
Query: 175 PPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGT 288
P +E R E ++ ++ + + GY +CP + G+
Sbjct: 181 VPDAETR-ELVEMDIREQLNEFGYP---GDTCPVIFGS 214
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 45.6 bits (103), Expect = 4e-05
Identities = 35/98 (35%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTE 174
MITG +Q + A+L+VAA G QTREH LLA +GV ++V +NK+D E
Sbjct: 130 MITGAAQMEGAILVVAATDGPMP-------QTREHLLLARQVGVPLDNIVVFMNKVD--E 180
Query: 175 PPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGT 288
P +E R E ++ ++ + + GY +CP + G+
Sbjct: 181 VPDAETR-ELVEMDIREQLNEFGYP---GDTCPVIFGS 214
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.17
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -3
Query: 158 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 30
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>AF039711-8|ABS19466.1| 766|Caenorhabditis elegans Hypothetical
protein F49D11.10 protein.
Length = 766
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/34 (47%), Positives = 18/34 (52%)
Frame = +2
Query: 512 KPGTIVVFAPANITTEVKSVEMHHEALQEAVPGD 613
KPGTI F P ITTE K H L+ + GD
Sbjct: 360 KPGTIQWFDPVTITTESKM----HVTLENTIDGD 389
>Z47068-6|CAA87334.2| 272|Caenorhabditis elegans Hypothetical
protein F15G9.5 protein.
Length = 272
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 433 CVFPCKTYTKSVVLVPCPSAELKLVFETRYHCCLC 537
C PC Y +++ CPS + F + C LC
Sbjct: 166 CENPCARYAPHLMVCDCPSIDQDTGFASEDRCQLC 200
>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
protein R107.8 protein.
Length = 1429
Score = 28.3 bits (60), Expect = 6.6
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 583 VVHLHRFDFSSDVGGGKDNNGT----WFQTPVSTLPTGTVPIPPILYTSCRGRRRGLSVG 416
V H HR FS D G NG F+ ST G V I +GR+ S G
Sbjct: 557 VCHQHRESFSCDCPPGFYGNGCEQEKMFRCLKSTCQNGGVCINE----EEKGRKCECSYG 612
Query: 415 RAGGRMASRASMRHFPSALPSLRSTC 338
+G R + ++ F LRS C
Sbjct: 613 FSGARCEEKINLTGFTEKDSLLRSVC 638
>U88315-18|ABO16437.1| 99|Caenorhabditis elegans Hypothetical
protein C37H5.13c protein.
Length = 99
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 320 HFG*RLQHVVSVPSRNGHESDSAGL*PIFLMYEDTSFLISSNLGSLYGGSVESIL 156
HF R QHV S PSR+ D G+ ++ T ++S + G +++ L
Sbjct: 18 HFAHRPQHVSSAPSRSMEIDDQNGVQHYPMLLNVTHIDMTSRADDIRAGLIDTFL 72
>U88315-17|AAK68238.1| 132|Caenorhabditis elegans Hypothetical
protein C37H5.13b protein.
Length = 132
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 320 HFG*RLQHVVSVPSRNGHESDSAGL*PIFLMYEDTSFLISSNLGSLYGGSVESIL 156
HF R QHV S PSR+ D G+ ++ T ++S + G +++ L
Sbjct: 51 HFAHRPQHVSSAPSRSMEIDDQNGVQHYPMLLNVTHIDMTSRADDIRAGLIDTFL 105
>U88315-16|AAK68237.1| 414|Caenorhabditis elegans Hypothetical
protein C37H5.13a protein.
Length = 414
Score = 28.3 bits (60), Expect = 6.6
Identities = 16/55 (29%), Positives = 26/55 (47%)
Frame = -3
Query: 320 HFG*RLQHVVSVPSRNGHESDSAGL*PIFLMYEDTSFLISSNLGSLYGGSVESIL 156
HF R QHV S PSR+ D G+ ++ T ++S + G +++ L
Sbjct: 51 HFAHRPQHVSSAPSRSMEIDDQNGVQHYPMLLNVTHIDMTSRADDIRAGLIDTFL 105
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 145 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGTETTCWSLQPKCL 324
V + KM+ + E ++ +I KEVS ++ + + + FL +TTCW + C+
Sbjct: 56 VAIKKMNFSGKQAVE-KWNDILKEVS-FLNTVVHPHIVDYKACFLK--DTTCWLVMEYCI 111
Query: 325 GS 330
GS
Sbjct: 112 GS 113
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 145 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGTETTCWSLQPKCL 324
V + KM+ + E ++ +I KEVS ++ + + + FL +TTCW + C+
Sbjct: 56 VAIKKMNFSGKQAVE-KWNDILKEVS-FLNTVVHPHIVDYKACFLK--DTTCWLVMEYCI 111
Query: 325 GS 330
GS
Sbjct: 112 GS 113
>U11280-4|AAM97951.2| 353|Caenorhabditis elegans Protein kinase
protein 18, isoformb protein.
Length = 353
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/62 (29%), Positives = 32/62 (51%)
Frame = +1
Query: 145 VGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPALSLSCPFLDGTETTCWSLQPKCL 324
V + KM+ + E ++ +I KEVS ++ + + + FL +TTCW + C+
Sbjct: 56 VAIKKMNFSGKQAVE-KWNDILKEVS-FLNTVVHPHIVDYKACFLK--DTTCWLVMEYCI 111
Query: 325 GS 330
GS
Sbjct: 112 GS 113
>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
C.elegans homeotic lin-12 protein gene, complete cds. ).
Length = 1429
Score = 28.3 bits (60), Expect = 6.6
Identities = 27/86 (31%), Positives = 34/86 (39%), Gaps = 4/86 (4%)
Frame = -1
Query: 583 VVHLHRFDFSSDVGGGKDNNGT----WFQTPVSTLPTGTVPIPPILYTSCRGRRRGLSVG 416
V H HR FS D G NG F+ ST G V I +GR+ S G
Sbjct: 557 VCHQHRESFSCDCPPGFYGNGCEQEKMFRCLKSTCQNGGVCINE----EEKGRKCECSYG 612
Query: 415 RAGGRMASRASMRHFPSALPSLRSTC 338
+G R + ++ F LRS C
Sbjct: 613 FSGARCEEKINLTGFTEKDSLLRSVC 638
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 1 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
++ ++ D A++I+ + AGI QT EH LLA ++I+ +NK D E
Sbjct: 89 VLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPNRVIIVLNKCDLAE-- 139
Query: 181 YSEPRFEEIKKEVSSYIKKIG 243
+ + E K+V +K +G
Sbjct: 140 --KSKISESAKKVRKGLKSMG 158
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = +2
Query: 560 VKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPKGAADFTAQVIVLN 739
V S+ +A+ PG+ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 740 H 742
H
Sbjct: 509 H 509
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,669,527
Number of Sequences: 27780
Number of extensions: 453524
Number of successful extensions: 1329
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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