Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10441
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   176   2e-46
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   176   2e-46
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   173   1e-45
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   168   4e-44
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   114   1e-27
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.2  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   5.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   5.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.8  

>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  176 bits (429), Expect = 2e-46
 Identities = 79/87 (90%), Positives = 82/87 (94%)
 Frame = +3

Query: 249 PSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 428
           P+AVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 128 PAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 187

Query: 429 PLRLPLQDVYKIGGIGTVPVGRVETGV 509
            LRLPLQDVYKIGGIGTVPVGRVETGV
Sbjct: 188 ALRLPLQDVYKIGGIGTVPVGRVETGV 214



 Score =  173 bits (422), Expect = 1e-45
 Identities = 84/85 (98%), Positives = 84/85 (98%)
 Frame = +1

Query: 1   MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
           MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP
Sbjct: 45  MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 104

Query: 181 YSEPRFEEIKKEVSSYIKKIGYNPA 255
           YSE RFEEIKKEVSSYIKKIGYNPA
Sbjct: 105 YSETRFEEIKKEVSSYIKKIGYNPA 129



 Score = 90.2 bits (214), Expect = 2e-20
 Identities = 43/60 (71%), Positives = 45/60 (75%)
 Frame = +2

Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 688
           LKPG +V FAPA +TTEVKSVEMHHEALQEAVPGD            ELRRGYVAGDSKN
Sbjct: 215 LKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 274


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  176 bits (429), Expect = 2e-46
 Identities = 79/87 (90%), Positives = 82/87 (94%)
 Frame = +3

Query: 249 PSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 428
           P+AVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 185 PAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 244

Query: 429 PLRLPLQDVYKIGGIGTVPVGRVETGV 509
            LRLPLQDVYKIGGIGTVPVGRVETGV
Sbjct: 245 ALRLPLQDVYKIGGIGTVPVGRVETGV 271



 Score =  173 bits (422), Expect = 1e-45
 Identities = 84/85 (98%), Positives = 84/85 (98%)
 Frame = +1

Query: 1   MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
           MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP
Sbjct: 102 MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 161

Query: 181 YSEPRFEEIKKEVSSYIKKIGYNPA 255
           YSE RFEEIKKEVSSYIKKIGYNPA
Sbjct: 162 YSETRFEEIKKEVSSYIKKIGYNPA 186



 Score =  149 bits (362), Expect = 2e-38
 Identities = 71/92 (77%), Positives = 73/92 (79%)
 Frame = +2

Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 688
           LKPG +V FAPA +TTEVKSVEMHHEALQEAVPGD            ELRRGYVAGDSKN
Sbjct: 272 LKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKN 331

Query: 689 NPPKGAADFTAQVIVLNHPGQNLKRYTPVLDC 784
           NPPKGAADFTAQVIVLNHPGQ    YTPVLDC
Sbjct: 332 NPPKGAADFTAQVIVLNHPGQISNGYTPVLDC 363


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  173 bits (422), Expect = 1e-45
 Identities = 84/85 (98%), Positives = 84/85 (98%)
 Frame = +1

Query: 1   MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
           MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP
Sbjct: 29  MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 88

Query: 181 YSEPRFEEIKKEVSSYIKKIGYNPA 255
           YSE RFEEIKKEVSSYIKKIGYNPA
Sbjct: 89  YSETRFEEIKKEVSSYIKKIGYNPA 113



 Score =  124 bits (298), Expect = 1e-30
 Identities = 53/60 (88%), Positives = 56/60 (93%)
 Frame = +3

Query: 249 PSAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 428
           P+AVAFVPISGWHGDNMLE S+KMPWFKGW VERKEGK +GKCLIEALDAILPP RPTDK
Sbjct: 112 PAAVAFVPISGWHGDNMLEVSSKMPWFKGWTVERKEGKVEGKCLIEALDAILPPTRPTDK 171


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  168 bits (409), Expect = 4e-44
 Identities = 74/86 (86%), Positives = 81/86 (94%)
 Frame = +3

Query: 252 SAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKP 431
           ++VAFVPISGWHGDNMLEPS K PW+KGW+VERK+G ADGK LIEALDAILPP+RPTDK 
Sbjct: 186 ASVAFVPISGWHGDNMLEPSPKTPWYKGWKVERKDGNADGKTLIEALDAILPPSRPTDKA 245

Query: 432 LRLPLQDVYKIGGIGTVPVGRVETGV 509
           LRLPLQDVYKIGGIGTVPVGRVETG+
Sbjct: 246 LRLPLQDVYKIGGIGTVPVGRVETGI 271



 Score =  165 bits (400), Expect = 5e-43
 Identities = 80/85 (94%), Positives = 81/85 (95%)
 Frame = +1

Query: 1   MITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 180
           MITGTSQADCAVLIVAAG GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD T+PP
Sbjct: 102 MITGTSQADCAVLIVAAGIGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDMTDPP 161

Query: 181 YSEPRFEEIKKEVSSYIKKIGYNPA 255
           YSE RFEEIKKEVSSYIKKIGYN A
Sbjct: 162 YSEARFEEIKKEVSSYIKKIGYNTA 186



 Score =  141 bits (341), Expect = 8e-36
 Identities = 67/92 (72%), Positives = 71/92 (77%)
 Frame = +2

Query: 509 LKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKN 688
           LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGD            ELRRGYVAGDSKN
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKN 331

Query: 689 NPPKGAADFTAQVIVLNHPGQNLKRYTPVLDC 784
            PP+GAADFTAQVIVLNHPGQ    YTPVLDC
Sbjct: 332 QPPRGAADFTAQVIVLNHPGQISNGYTPVLDC 363


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  114 bits (274), Expect = 1e-27
 Identities = 54/74 (72%), Positives = 56/74 (75%)
 Frame = +2

Query: 563 KSVEMHHEALQEAVPGDXXXXXXXXXXXXELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 742
           KSVEMHHEAL EA+PGD            ELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 743 PGQNLKRYTPVLDC 784
           PGQ    YTPVLDC
Sbjct: 61  PGQISNGYTPVLDC 74


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 182 TVSPDLRKSRRKYPHTSRRLATTQRC 259
           T S  LR     + HTS R +  +RC
Sbjct: 212 TSSNSLRNRTHDFQHTSSRYSRERRC 237


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/28 (25%), Positives = 14/28 (50%)
 Frame = -2

Query: 309 KAPTCCLRAIQKWARKRQRWVVANLLDV 226
           + P   +  I+ W      W++ N+LD+
Sbjct: 490 RQPEPLIELIEHWMPLLPNWILENILDM 517


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +2

Query: 650 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQNL 757
           +LR  ++A +   + PKG      Q++VLN  G  L
Sbjct: 286 DLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAGNRL 321


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 161 WIPLNHHTVSPDLRKSRRKY 220
           W+P+N +  S +L   +R+Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,066
Number of Sequences: 438
Number of extensions: 5520
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)