Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10436
         (720 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)              101   6e-22
SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)               81   1e-15
SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)               76   3e-14
SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.)              58   9e-09
SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.005
SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.10 

>SB_40595| Best HMM Match : Pkinase (HMM E-Value=3.4e-08)
          Length = 335

 Score =  101 bits (242), Expect = 6e-22
 Identities = 47/87 (54%), Positives = 60/87 (68%), Gaps = 3/87 (3%)
 Frame = +2

Query: 14  EFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGG--LRDNHQT 187
           EF  YL  CR LRF+++PDY++LRQLFR LFHRQG+TYDYVFDWN+LKFG   + D    
Sbjct: 153 EFATYLNNCRSLRFDDKPDYSYLRQLFRNLFHRQGYTYDYVFDWNLLKFGSGRVEDPGPD 212

Query: 188 SGIDRALRR-LEQNQEQENTAATAASP 265
              DRAL R  ++  +Q  ++ T A P
Sbjct: 213 KSRDRALERDRDERHQQMRSSTTRALP 239


>SB_57461| Best HMM Match : Pkinase (HMM E-Value=1.1e-34)
          Length = 355

 Score = 80.6 bits (190), Expect = 1e-15
 Identities = 33/50 (66%), Positives = 37/50 (74%)
 Frame = +2

Query: 8   PIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLK 157
           P EF +YL YCR LRFEE PDY +LRQLFR LF    + YDY+FDW MLK
Sbjct: 255 PAEFAMYLNYCRGLRFEEAPDYMYLRQLFRILFRTLNYQYDYIFDWTMLK 304


>SB_58677| Best HMM Match : Pkinase (HMM E-Value=2.8e-33)
          Length = 834

 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 31/50 (62%), Positives = 35/50 (70%)
 Frame = +2

Query: 8   PIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLK 157
           P EF +YL YC+ LRFEE PDY +LRQLFR LF      YDY+FDW  LK
Sbjct: 253 PAEFSMYLNYCKGLRFEEAPDYMYLRQLFRILFRTLNHQYDYIFDWTTLK 302


>SB_18577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 24/44 (54%), Positives = 30/44 (68%)
 Frame = +2

Query: 14  EFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDW 145
           E   YL+Y RRL F E PDY +LR+LFR L  R+G+  D+ FDW
Sbjct: 229 EMATYLRYVRRLDFFETPDYEYLRKLFRDLMERKGYVEDFEFDW 272


>SB_34086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 890

 Score = 38.7 bits (86), Expect = 0.005
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +2

Query: 8   PIEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGGLRDNHQT 187
           P EF+ ++ +  +L++E++PDY  L  L   +  R+G      +DW        +  H T
Sbjct: 106 PGEFKQFVDHISKLKYEDKPDYKMLLGLLEQIIKRKGIKESDPYDWETTPCDCSQTTHTT 165

Query: 188 S 190
           S
Sbjct: 166 S 166


>SB_6695| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 34.3 bits (75), Expect = 0.10
 Identities = 12/40 (30%), Positives = 26/40 (65%)
 Frame = +2

Query: 11  IEFQLYLKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYD 130
           +E + +L+Y   L +++ PDY+ LR++F+    ++G + D
Sbjct: 136 VELKEFLQYVATLEYDQAPDYSRLRKMFQNGLKKRGVSDD 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,195,253
Number of Sequences: 59808
Number of extensions: 411075
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)