Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10436
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.13 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.13 
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     25   0.54 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.95 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   5.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   5.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.1  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 29  LKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGGLRDNHQTS 190
           L+ C +L+  +  D     Q+  T    +   YDY   W   ++GG++  H  S
Sbjct: 54  LRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKMLHVPS 107


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 29  LKYCRRLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGGLRDNHQTS 190
           L+ C +L+  +  D     Q+  T    +   YDY   W   ++GG++  H  S
Sbjct: 54  LRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKMLHVPS 107


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 25.4 bits (53), Expect = 0.54
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 621 WADELVTFLAIFKYVTLSYV 680
           WAD L+ F  +F+Y+ L+ +
Sbjct: 42  WADGLLVFYEVFRYLELAMI 61


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 24.6 bits (51), Expect = 0.95
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 236 LVPDFVQDV*ERDQYHLFDGYHAVLQ 159
           L PDF  DV ERD  HL + +  + Q
Sbjct: 119 LEPDFTSDVTERDN-HLVNAFKTLTQ 143


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 45  DYNLQWNESEYGGVKD 60


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 45  DYNLQWNESEYGGVKD 60


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 45  DYNLQWNESEYGGVKD 60


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 45  DYNLQWNESEYGGVKD 60


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 45  DYNLQWNESEYGGVKD 60


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 45  DYNLQWNESEYGGVKD 60


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 113 DYNLQWNESEYGGVKD 128


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 128 DYVFDWNMLKFGGLRD 175
           DY   WN  ++GG++D
Sbjct: 113 DYNLQWNESEYGGVKD 128


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +2

Query: 44  RLRFEERPDYAHLRQLFRTLFHRQGFTYDYVFDWNMLKFGGLRDNHQTS 190
           +L+  +  D     Q+  T    +   YDY   W+  ++GG+   H  S
Sbjct: 55  KLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLKWDPKEYGGVEMLHVPS 103


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = -2

Query: 692 NVIYYIT*RYIFKNCEKSY 636
           ++++YI  RY+F++  + Y
Sbjct: 343 SIVFYIISRYVFRSALEDY 361


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 618 KWADELVTFLAIFKYVTLSYVI 683
           KW  ++V F ++F Y  L+ ++
Sbjct: 229 KWTGKVVYFTSLFPYALLTILL 250


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 618 KWADELVTFLAIFKYVTLSYVI 683
           KW  ++V F ++F Y  L+ ++
Sbjct: 282 KWTGKVVYFTSLFPYALLTILL 303


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 242  TAATAASPVMQWQQFRNGG 298
            T++T++S ++ W+   NGG
Sbjct: 1413 TSSTSSSILLHWKSGHNGG 1431


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 242  TAATAASPVMQWQQFRNGG 298
            T++T++S ++ W+   NGG
Sbjct: 1409 TSSTSSSILLHWKSGHNGG 1427


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 195 IPLV*WLSRSPPN 157
           IP+V  LS+SPPN
Sbjct: 185 IPIVRSLSKSPPN 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,967
Number of Sequences: 438
Number of extensions: 3906
Number of successful extensions: 21
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)