Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10431
         (834 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57380.1 68418.m07169 fibronectin type III domain-containing ...    30   2.2  
At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase fa...    29   2.9  
At1g19230.1 68414.m02393 respiratory burst oxidase protein E (Rb...    29   2.9  
At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger) fa...    28   8.8  
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica...    28   8.8  

>At5g57380.1 68418.m07169 fibronectin type III domain-containing
           protein / PHD finger protein-related contains Pfam
           profiles PF00041: Fibronectin type III domain, PF00628:
           PHD-finger
          Length = 600

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 23/34 (67%)
 Frame = +2

Query: 335 DRDRVECCSSLEQESTIKERGLQRQRAKNRLSGR 436
           D+D  E CS+ E ES ++E  L +++A N++ GR
Sbjct: 434 DKDNTEHCSAGEVESELEEERLVKRKA-NKIDGR 466


>At5g59490.1 68418.m07456 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P53078 SSM1 protein
           {Saccharomyces cerevisiae}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 266

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 719 CLFF*IHSNMYPLMSNNPDKCFNNI 793
           CL F +   +YPL S   D C NNI
Sbjct: 13  CLLFDLDDTLYPLSSGLSDACSNNI 37


>At1g19230.1 68414.m02393 respiratory burst oxidase protein E
           (RbohE) / NADPH oxidase nearly identical to respiratory
           burst oxidase protein E GI:3242787 [gi:3242787] from
           [Arabidopsis thaliana]
          Length = 926

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 391 TWTPTSK--GEKPSIRAMAHYVNHHPNQVFWGRGAVK 495
           T TPTS   G+K +++A  ++V   P  V W RG ++
Sbjct: 777 TATPTSTHGGKKKAVKAHFYWVTREPGSVEWFRGVME 813


>At3g15070.1 68416.m01906 zinc finger (C3HC4-type RING finger)
           family protein similar to C-terminal zinc-finger
           [Glycine max] GI:558543; contains Pfam profile: PF00097
           zinc finger, C3HC4 type (RING finger)
          Length = 486

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 397 TPTSKGEKPSIRAMAHYVNHHP 462
           T +S+   PS+    HY++HHP
Sbjct: 260 TSSSRNPTPSVYQRNHYISHHP 281


>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
           domain-containing protein similar to SP|Q03468 Excision
           repair protein ERCC-6 (Cockayne syndrome protein CSB)
           {Homo sapiens}; contains PFam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1187

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 42  PIVSRITIHWPSFYNVVTGKTLALPNLIALQHIPLSPAGVIAKRPAPIALPNSCA 206
           PI +++T  W  F  V  GK   LP   A   +P++  G     P  ++    CA
Sbjct: 576 PIQNKLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCA 630


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,601,435
Number of Sequences: 28952
Number of extensions: 363232
Number of successful extensions: 797
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)