Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10430
(707 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0995 - 13071930-13072007,13072708-13072999,13073096-130732... 31 0.90
10_08_1065 - 22640931-22641114,22641213-22641334,22641512-226416... 30 1.6
06_03_1310 + 29238644-29240260 30 1.6
01_01_0911 - 7176355-7176372,7176502-7176756,7177352-7177615,717... 30 1.6
03_05_1079 + 30222017-30222903,30222992-30223117,30223752-302238... 29 2.7
03_01_0266 - 2057354-2057638,2057762-2058022,2058342-2058778,205... 29 2.7
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 29 2.7
11_05_0087 + 18970741-18972702 29 3.6
02_05_0900 + 32616049-32616135,32616593-32616695,32616925-326170... 29 4.8
09_01_0129 - 1954470-1955129,1956285-1956371,1956475-1956663,195... 28 8.4
05_05_0062 + 22039410-22039985,22041467-22041555,22041638-220417... 28 8.4
>03_02_0995 -
13071930-13072007,13072708-13072999,13073096-13073226,
13073564-13074466,13074545-13074631,13075141-13075224,
13075355-13075408,13075903-13076034,13076164-13076259,
13076508-13076777,13078711-13078800,13079942-13080008,
13080150-13080241,13080359-13080487
Length = 834
Score = 31.1 bits (67), Expect = 0.90
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Frame = +1
Query: 28 PVVYFQVLALTGQFEPAIEFLSR---IPRYQVHGVHMALALHD 147
P+VY VL L+ Q PAI +LS+ Y V VH+++AL D
Sbjct: 491 PLVYPYVLLLSIQLLPAILYLSKEVGEEGYHVDAVHISIALSD 533
>10_08_1065 -
22640931-22641114,22641213-22641334,22641512-22641633,
22663988-22664051,22664789-22664878,22665039-22665125,
22665221-22665363,22665400-22665421
Length = 277
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = +3
Query: 183 STPVCGHRRSTTVASFELSETVAAYVRKFELTDPSDALHY 302
S P C H R VAS E E AYVR L+ SDA+ Y
Sbjct: 4 SEPWCLHERPNRVASGEKEEWAVAYVR---LSLSSDAISY 40
>06_03_1310 + 29238644-29240260
Length = 538
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = -3
Query: 663 HRLASRPRTPVSPPPLFTTCASNMQDNSTTFSKLSAISYMVIASSNKPLFTSAQQHSTQS 484
H + R RTP +PPP + S++ T+S+ S S M ++S ++ S+ S
Sbjct: 387 HHMPPR-RTPPTPPPPSSPTPSHLPPPPPTYSE-SPKSSMPPSTSPPSSHGASPPSSSSS 444
Query: 483 PCCQYEGY*IDP 448
P ++ GY + P
Sbjct: 445 PPTEHPGYVLPP 456
>01_01_0911 -
7176355-7176372,7176502-7176756,7177352-7177615,
7177691-7177810,7177910-7178041,7178136-7178252,
7178335-7178459,7178611-7178920,7179368-7179550,
7179643-7179787,7180126-7181355,7181454-7181563,
7181768-7182037,7182130-7182963
Length = 1370
Score = 30.3 bits (65), Expect = 1.6
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +2
Query: 491 VECC*ALVNKGLFEDAITMYDIADNLEKVVELSC--ILLAQVVNSGGGETGVRGRLAKRC 664
V+C AL KGL E ++ ++ + E++VE+ L+A + GG + G G + K C
Sbjct: 648 VDCLVALFKKGLVEAVSLIHLLSPSPEQLVEMDMADALVATIRRGGGDDDG--GAVVKMC 705
>03_05_1079 +
30222017-30222903,30222992-30223117,30223752-30223808,
30224883-30224913,30225159-30225236,30225297-30225383
Length = 421
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -2
Query: 688 P*LRVSQFTSFSEP--TAHPGFPAAAIHHLRQQYAGQLYDLFQ 566
P L++ Q S + P T HP P+A +H ++Q + Q + L Q
Sbjct: 144 PPLQLIQPVSVAPPAGTPHPALPSAHLHFIQQHQSYQRFQLMQ 186
>03_01_0266 -
2057354-2057638,2057762-2058022,2058342-2058778,
2058889-2059213
Length = 435
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -3
Query: 702 FRWKPRSFASVSSHRLASRPRTPVSPP 622
F P S S HR+ SRPR P++PP
Sbjct: 19 FSSSPESRRCRSVHRVPSRPRPPLAPP 45
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +2
Query: 482 GDCVECC*---ALVNKGLFEDAITMYDIADNLEKVVELSCILLAQVVNSGGGETG 637
G C +CC ALV + L E ++ + + E L +++N GGGE+G
Sbjct: 92 GICAKCCTCVKALVGRDLSEQESERKELEEAIRGARERERRTLLRLMNKGGGESG 146
>11_05_0087 + 18970741-18972702
Length = 653
Score = 29.1 bits (62), Expect = 3.6
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = -3
Query: 705 RFRWKPRSFASVSSHRLASR---PRTPVSPPPLFTTCAS-NMQDNSTTFSKLSAISYMVI 538
R RW+ SV HRLA R P+ P PPP +C + ++ D LS S+ +
Sbjct: 522 RRRWQADLDESV--HRLARRRGWPKPPPPPPPTKISCMNQSLDDAGGDIHGLSGRSFACL 579
Query: 537 ASS 529
SS
Sbjct: 580 RSS 582
>02_05_0900 +
32616049-32616135,32616593-32616695,32616925-32617004,
32617118-32617447,32617623-32617735,32617861-32617903,
32617968-32618045,32618328-32618339
Length = 281
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -2
Query: 238 LSSNDATVVDLLCPQTGVELEHSSVCPACK 149
+SS + VD LC Q G+E + +C AC+
Sbjct: 241 ISSTSPSRVDPLCLQIGLEKNYEILCKACE 270
>09_01_0129 -
1954470-1955129,1956285-1956371,1956475-1956663,
1956772-1956900,1957386-1957472,1957572-1958036,
1959844-1959923,1961295-1961358,1961444-1961455
Length = 590
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -2
Query: 643 AHPGFPAAAIHHLRQQYAGQLYDLFQIICNIVHGNSIF 530
A G A+ H Q ++++LF ++C + GN+IF
Sbjct: 164 AREGMTVVAVVH---QPCSEVFELFHVLCLLAAGNTIF 198
>05_05_0062 +
22039410-22039985,22041467-22041555,22041638-22041770,
22041864-22042093,22042199-22042675,22042748-22042934,
22043536-22043574,22043624-22044052
Length = 719
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 611 VNSGGGETGVRGRLAKRCELTDAKLRGF 694
V GGG+ G GRL K+ E+ DA + G+
Sbjct: 151 VGGGGGDDG--GRLVKKVEVADADVMGW 176
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,507,860
Number of Sequences: 37544
Number of extensions: 360389
Number of successful extensions: 1240
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1238
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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