Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10430
(707 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore... 44 1e-04
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass... 37 0.016
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass... 37 0.016
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 32 0.35
Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z54306-3|CAE17716.1| 165|Caenorhabditis elegans Hypothetical pr... 30 1.4
U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical p... 30 1.9
U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical p... 30 1.9
AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeri... 28 7.5
AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein, su... 28 7.5
AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alp... 28 7.5
AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s... 28 7.5
>AC087079-13|AAK27866.1| 787|Caenorhabditis elegans Nuclear pore
complex protein protein13, isoform a protein.
Length = 787
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/86 (26%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Frame = +3
Query: 204 RRSTTVASFELSETVAAYVRKFELTDPSDALHYYYFLRNLKDPSGKNLF-MCCCTDLALE 380
+ +T L+ + AY + FEL D +L Y++ L+ + P+G ++F M + L
Sbjct: 490 QNDSTKCHLNLARLIVAYTKSFELVDVPRSLDYWFLLKGITTPTGSDVFEMAVSRSVYLT 549
Query: 381 SRDYELLFGRIDANSSLRSPGLVDQF 458
+ E+L G++ + R GL+D++
Sbjct: 550 GQTDEIL-GKLTPDGR-REKGLIDEY 573
>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform a protein.
Length = 1020
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/91 (27%), Positives = 43/91 (47%)
Frame = -2
Query: 280 SVSSNFLT*AATVSLSSNDATVVDLLCPQTGVELEHSSVCPACKRHVTQEPYEHRVLDIL 101
S SS F + + + ++A VD CP+T +++ S P+C T+EP
Sbjct: 269 STSSEFTETTSVANQTESNAGSVDDYCPRTSIDIGLDSSAPSCSSDATREPTP------- 321
Query: 100 VFSRGIR*LAQIVQSEPTLESTRLAFHKHDN 8
+ RG + Q +EP + T+ A+ K+ N
Sbjct: 322 IKKRGRKKKEQSA-TEPPIPRTKRAYTKNPN 351
>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
assigned gene nameprotein 279, isoform b protein.
Length = 1061
Score = 36.7 bits (81), Expect = 0.016
Identities = 25/91 (27%), Positives = 43/91 (47%)
Frame = -2
Query: 280 SVSSNFLT*AATVSLSSNDATVVDLLCPQTGVELEHSSVCPACKRHVTQEPYEHRVLDIL 101
S SS F + + + ++A VD CP+T +++ S P+C T+EP
Sbjct: 310 STSSEFTETTSVANQTESNAGSVDDYCPRTSIDIGLDSSAPSCSSDATREPTP------- 362
Query: 100 VFSRGIR*LAQIVQSEPTLESTRLAFHKHDN 8
+ RG + Q +EP + T+ A+ K+ N
Sbjct: 363 IKKRGRKKKEQSA-TEPPIPRTKRAYTKNPN 392
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 32.3 bits (70), Expect = 0.35
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -3
Query: 675 SVSSHRLASRPRTPVSPPPLFTTCASNMQDNSTTFSKLSAISYMVIASSN-KPLFTSAQQ 499
+V+S A + +PP TT A + +ST K + I+ + + S+ K FTS
Sbjct: 384 NVTSTTTAPTTESSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTTEKTTFTSTSS 443
Query: 498 HSTQSPCC 475
+T SP C
Sbjct: 444 STTSSPVC 451
>Z81062-8|CAD59145.1| 808|Caenorhabditis elegans Hypothetical
protein F15A4.8b protein.
Length = 808
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 642 RTPVSPPPLFTTCASNMQDNSTTFSKLSAISYMVIASSN-KPLFTSAQQHSTQSPCC 475
++ +PP TT A + +ST K + I+ + + S+ K FTS +T SP C
Sbjct: 432 KSSTTPPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTTEKTTFTSTSSSTTSSPVC 488
>Z54306-3|CAE17716.1| 165|Caenorhabditis elegans Hypothetical
protein B0457.6 protein.
Length = 165
Score = 30.3 bits (65), Expect = 1.4
Identities = 22/70 (31%), Positives = 28/70 (40%)
Frame = -3
Query: 675 SVSSHRLASRPRTPVSPPPLFTTCASNMQDNSTTFSKLSAISYMVIASSNKPLFTSAQQH 496
S SSHR AS PR P T D TF+ I+ +P +S+
Sbjct: 8 STSSHRFASEPRPP--------TQIKRRDDRIRTFNSFDDITESEEEDIQEPTSSSSSTT 59
Query: 495 STQSPCCQYE 466
S +SP YE
Sbjct: 60 SERSPYATYE 69
>U88315-13|AAN84844.1| 359|Caenorhabditis elegans Hypothetical
protein C37H5.3b protein.
Length = 359
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 285 SDALHYYYFLRNLKDPSGKNLFMCCCTDLALESRDYELLFGRID 416
S+ ++ Y +L N +DP+G+ +F C +L + F +D
Sbjct: 235 SEDVYDYIYLANSRDPTGEEVFKCLSENLGWAKQPMSKRFHELD 278
>U88315-12|AAB42367.1| 444|Caenorhabditis elegans Hypothetical
protein C37H5.3a protein.
Length = 444
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 285 SDALHYYYFLRNLKDPSGKNLFMCCCTDLALESRDYELLFGRID 416
S+ ++ Y +L N +DP+G+ +F C +L + F +D
Sbjct: 320 SEDVYDYIYLANSRDPTGEEVFKCLSENLGWAKQPMSKRFHELD 363
>AY008141-1|AAG32094.1| 375|Caenorhabditis elegans heterotrimeric G
protein alphasubunit protein.
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +3
Query: 150 LHAGHTEECSSSTPVCGHRRSTTVASFELSETVAAYVRKFELTDPSDALHYYYFLRNLKD 329
LH E + RR+ A + + V K L DPS A+ Y LR D
Sbjct: 59 LHINGFNEAEKREKITDIRRNVRDAMQVILRAMDEIVPKVSLDDPSTAISRDYILRITND 118
Query: 330 P 332
P
Sbjct: 119 P 119
>AF039715-1|AAB96733.2| 375|Caenorhabditis elegans G protein,
subunit alpha protein 1 protein.
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +3
Query: 150 LHAGHTEECSSSTPVCGHRRSTTVASFELSETVAAYVRKFELTDPSDALHYYYFLRNLKD 329
LH E + RR+ A + + V K L DPS A+ Y LR D
Sbjct: 59 LHINGFNEAEKREKITDIRRNVRDAMQVILRAMDEIVPKVSLDDPSTAISRDYILRITND 118
Query: 330 P 332
P
Sbjct: 119 P 119
>AB003487-1|BAA22402.1| 375|Caenorhabditis elegans G protein alpha
subunit protein.
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +3
Query: 150 LHAGHTEECSSSTPVCGHRRSTTVASFELSETVAAYVRKFELTDPSDALHYYYFLRNLKD 329
LH E + RR+ A + + V K L DPS A+ Y LR D
Sbjct: 59 LHINGFNEAEKREKITDIRRNVRDAMQVILRAMDEIVPKVSLDDPSTAISRDYILRITND 118
Query: 330 P 332
P
Sbjct: 119 P 119
>AB003486-1|BAA22401.1| 375|Caenorhabditis elegans G protein a(s)
subunit protein.
Length = 375
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/61 (29%), Positives = 23/61 (37%)
Frame = +3
Query: 150 LHAGHTEECSSSTPVCGHRRSTTVASFELSETVAAYVRKFELTDPSDALHYYYFLRNLKD 329
LH E + RR+ A + + V K L DPS A+ Y LR D
Sbjct: 59 LHINGFNEAEKREKITDIRRNVRDAMQVILRAMDEIVPKVSLDDPSTAISRDYILRITND 118
Query: 330 P 332
P
Sbjct: 119 P 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,283,840
Number of Sequences: 27780
Number of extensions: 302620
Number of successful extensions: 902
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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