Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10430
         (707 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.7  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -3

Query: 132 SHMNTVYLISWYSREEFDSWLKLSSQSQHLKV 37
           ++ NT   ++ Y R+    WL+++     +KV
Sbjct: 103 NYWNTKNCVNPYDRDSLSCWLQMTKHHNFIKV 134


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
 Frame = +3

Query: 207 RSTTVASFELSETVAAYVRKFELTDPSDALHYYYFLRNLKDPSGKNLFMCCCTDLALESR 386
           R+ T    ++ + V  Y++    +D + +  + + +  L   +G+  F       A +  
Sbjct: 287 RTPTYRMQQVEQPVQVYIQLKRPSDGATSEPFPFLMLPLG--AGRPAFWSLRKAFARKKT 344

Query: 387 DYELLFGRIDA-------NSSLRSPGLVDQFNNPHIDSK 482
           DY   FG+I A       N + + P  +D++NN  +D+K
Sbjct: 345 DYSS-FGKILATEPTLFSNVTPKFPRNIDEYNNNDLDTK 382


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,818
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)