Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10429
         (423 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4SU72 Cluster: Putative uncharacterized protein; n=6; ...    34   1.4  
UniRef50_Q24832 Cluster: Cytochrome b-like protein; n=2; Entamoe...    33   2.4  
UniRef50_Q3AP56 Cluster: Putative uncharacterized protein; n=1; ...    31   7.4  

>UniRef50_A4SU72 Cluster: Putative uncharacterized protein; n=6;
           Gammaproteobacteria|Rep: Putative uncharacterized
           protein - Aeromonas salmonicida (strain A449)
          Length = 180

 Score = 33.9 bits (74), Expect = 1.4
 Identities = 19/41 (46%), Positives = 23/41 (56%)
 Frame = +3

Query: 87  VVCVLRTLGGALVTVRVAARPCHVNHSLTQFR*YGNSKHQI 209
           +V VLRT G ALV  +V   P HV H +     +GNS  QI
Sbjct: 43  LVWVLRTCGSALVPTKVGVHPTHVTHWI-----WGNSGQQI 78


>UniRef50_Q24832 Cluster: Cytochrome b-like protein; n=2; Entamoeba
           histolytica|Rep: Cytochrome b-like protein - Entamoeba
           histolytica
          Length = 396

 Score = 33.1 bits (72), Expect = 2.4
 Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
 Frame = -3

Query: 421 FFFFF*QRVYSVLNRH-HLGNMCTMHTNIKLV---TFPIKYNQA*YVISQLIVSEHRPAR 254
           FFFFF        N   ++G++   H    L    TFP+ YN   ++I+ ++       +
Sbjct: 19  FFFFFGSSYLMFYNTLLNVGDLLATHFTYDLSYMSTFPLFYNWFNFLIAIIMTYLASSLK 78

Query: 253 SA*EGINTYTLFIIQIWCLLFPYYLNCVRE*LTWQGRAATRTVTSAPPSVRST 95
           S    I  +T FI+ I+ LL P+    ++E     G     T    P  + S+
Sbjct: 79  SFPHNILAHTSFILHIFYLLSPHCPCFMKEICRILGYICISTFNGLPTPINSS 131


>UniRef50_Q3AP56 Cluster: Putative uncharacterized protein; n=1;
           Chlorobium chlorochromatii CaD3|Rep: Putative
           uncharacterized protein - Chlorobium chlorochromatii
           (strain CaD3)
          Length = 303

 Score = 31.5 bits (68), Expect = 7.4
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 99  LRTLGGALVTVRVAARPCHVNHSLTQFR*YGN 194
           LRTL GALV +   A   H+NH+  Q   YGN
Sbjct: 119 LRTLDGALVAI---ANTAHLNHAANQITLYGN 147


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 396,664,404
Number of Sequences: 1657284
Number of extensions: 7037237
Number of successful extensions: 13137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 12752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13116
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19810951153
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)